RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 DALRD3Q5D0E6 543 aaKnown RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 UBXN11Q5T124 520 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 NBPF12Q5TAG4 269 aaPredicted RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 HEATR6Q6AI08 1181 aaKnown RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 C16orf86Q6ZW13 317 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 LDHDQ86WU2 507 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 DHX37Q8IY37 1157 aaKnown RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 CCDC144CPQ8IYA2 1237 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 RPUSD2Q8IZ73 545 aaKnown RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 ANKS4BQ8N8V4 417 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 ZBTB38Q8NAP3 1195 aaPredicted RBP2.36□□□□□ -2.03
USP3-209ENST00000558925 DTWD2Q8NBA8 298 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 BRF1Q92994 677 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 FEZ1Q99689 392 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 PLCD4Q9BRC7 762 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 PCDH12Q9NPG4 1184 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 SMPD4Q9NXE4 827 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 KLHL14Q9P2G3 628 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 PALD1Q9ULE6 856 aa2.36□□□□□ -2.03
USP3-209ENST00000558925 hCG_2014768A0A024R1R8 64 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 ANKRD34BA5PLL1 514 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 MEIS1O00470 390 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 RAB11FIP3O75154 756 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 CLSTN1O94985 981 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 PLA2G1BP04054 148 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 ITGB3P05106 788 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SDSP20132 328 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 CD247P20963 164 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 TACR2P21452 398 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 IGFBP6P24592 240 aaPredicted RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 CCNFP41002 786 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 LIMS1P48059 325 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 EVA1CP58658 441 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 CHRNEQ04844 493 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 PABPC4Q13310 644 aaKnown RBP eCLIP2.35□□□□□ -2.03
USP3-209ENST00000558925 PPP2R5DQ14738 602 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 TCEA2Q15560 299 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SF1Q15637 639 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 PRSS53Q2L4Q9 553 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 BBS9Q3SYG4 887 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 RNF187Q5TA31 235 aaPredicted RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 NT5DC1Q5TFE4 455 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 CPZQ66K79 652 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SPRED1Q7Z699 444 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 ADAT2Q7Z6V5 191 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 SPPL2CQ8IUH8 684 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 LRRC47Q8N1G4 583 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 UBR7Q8N806 425 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 ZSWIM2Q8NEG5 633 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 BTN2A2Q8WVV5 523 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 KISS1RQ969F8 398 aaPredicted RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 COX4I2Q96KJ9 171 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 MRGPRX3Q96LB0 322 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 DHRS1Q96LJ7 313 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 KREMEN1Q96MU8 473 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 CLUHP3Q96NS8 147 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SPATA25Q9BR10 227 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 AARSD1Q9BTE6 412 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 IER2Q9BTL4 223 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 C1QTNF3Q9BXJ4 246 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SLKQ9H2G2 1235 aaPredicted RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 SPC25Q9HBM1 224 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 GP6Q9HCN6 339 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 GPATCH2Q9NW75 528 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 GFOD1Q9NXC2 390 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 KLHL42Q9P2K6 505 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 LRP2BPQ9P2M1 347 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 PLA2G2DQ9UNK4 145 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 SUGT1Q9Y2Z0 365 aa2.35□□□□□ -2.03
USP3-209ENST00000558925 MRPS23Q9Y3D9 190 aaKnown RBP2.35□□□□□ -2.03
USP3-209ENST00000558925 A0A087X0B3 334 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TRBV23-1A0A0A0MS06 115 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TRAV20A0A0B4J274 112 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 FAM83GA6ND36 823 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 PRODHO43272 600 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 BUB1BO60566 1050 aaPredicted RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 KCNH1O95259 989 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CAPNS1P04632 268 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 POU3F3P20264 500 aaPredicted RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 CYP7A1P22680 504 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CNR2P34972 360 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CDKN1CP49918 316 aaPredicted RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 ZNF445P59923 1031 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 IGBP1P78318 339 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CYP4F3Q08477 520 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 AUHQ13825 339 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 DPY19L1Q2PZI1 675 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TM4SF20Q53R12 229 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 CRIP3Q6Q6R5 217 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TMC6Q7Z403 805 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TMC3Q7Z5M5 1100 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 THNSL2Q86YJ6 484 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 JAMLQ86YT9 394 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 TRIM59Q8IWR1 403 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 C7orf61Q8IZ16 206 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 BVESQ8NE79 360 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 STAG1Q8WVM7 1258 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 DDX1Q92499 740 aaKnown RBP2.34□□□□□ -2.03
USP3-209ENST00000558925 OSBP2Q969R2 916 aa2.34□□□□□ -2.03
USP3-209ENST00000558925 ZNF669Q96BR6 464 aaPredicted RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms