RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 BUB1BO60566 1050 aaPredicted RBP12.53□□□□□ -0.4
LDLR-208ENST00000558518 NAA25Q14CX7 972 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 SEC23AQ15436 765 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 MICALCLQ6ZW33 695 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 C5P01031 1676 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 RIC1Q4ADV7 1423 aa12.53□□□□□ -0.4
LDLR-208ENST00000558518 LRRC10BA6NIK2 292 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 SUSD4Q5VX71 490 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 DUSP9Q99956 384 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 PACSIN1Q9BY11 444 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 HAUS2Q9NVX0 235 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 GRIN2DO15399 1336 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 ZC3H4Q9UPT8 1303 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 SKAP2O75563 359 aaPredicted RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 MYCNP04198 464 aaPredicted RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 KRT18P05783 430 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 TCP1P17987 556 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 PAK2Q13177 524 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 TTI2Q6NXR4 508 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 FAM114A1Q8IWE2 563 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 FAM133AQ8N9E0 248 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 TSGA10Q9BZW7 698 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 SH2D4AQ9H788 454 aa12.52□□□□□ -0.4
LDLR-208ENST00000558518 RBM28Q9NW13 759 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 GEMIN8Q9NWZ8 242 aaKnown RBP12.52□□□□□ -0.4
LDLR-208ENST00000558518 CCDC172P0C7W6 258 aa12.52□□□□□ -0.41
LDLR-208ENST00000558518 ALX1Q15699 326 aa12.52□□□□□ -0.41
LDLR-208ENST00000558518 NAALADL2Q58DX5 795 aa12.52□□□□□ -0.41
LDLR-208ENST00000558518 NLRP14Q86W24 1093 aa12.52□□□□□ -0.41
LDLR-208ENST00000558518 PNMA1Q8ND90 353 aa12.52□□□□□ -0.41
LDLR-208ENST00000558518 LSM14BQ9BX40 385 aaKnown RBP12.52□□□□□ -0.41
LDLR-208ENST00000558518 DDX47Q9H0S4 455 aaKnown RBP12.52□□□□□ -0.41
LDLR-208ENST00000558518 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.52□□□□□ -0.412e-6■■■■■ 72.5
LDLR-208ENST00000558518 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.52□□□□□ -0.41
LDLR-208ENST00000558518 NOVA2Q9UNW9 492 aaKnown RBP12.52□□□□□ -0.41
LDLR-208ENST00000558518 N4BP2Q86UW6 1770 aaPredicted RBP12.52□□□□□ -0.41
LDLR-208ENST00000558518 PDS5AQ29RF7 1337 aaKnown RBP12.52□□□□□ -0.41
LDLR-208ENST00000558518 BICDL2A1A5D9 508 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 ZNF233A6NK53 670 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 PHF20L1A8MW92 1017 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 CCNE1P24864 410 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 KRT71Q3SY84 523 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 CAVIN4Q5BKX8 364 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 VGLL2Q8N8G2 317 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 CALML4Q96GE6 196 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 NUP58Q9BVL2 599 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 THAP9Q9H5L6 903 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 CNTNAP5Q8WYK1 1306 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 CDC25CP30307 473 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 GBP2P32456 591 aaPredicted RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 LONP1P36776 959 aaKnown RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 IFNAR2P48551 515 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 NBPF9Q3BBW0 867 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 SOGA3Q5TF21 947 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 MDM1Q8TC05 714 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 ZNF507Q8TCN5 953 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 POTEMA6NI47 508 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 RASSF10A6NK89 507 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 GCOM1H8Y6P7 765 aaPredicted RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 MYZAPP0CAP1 466 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 KIF5BP33176 963 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 COPB2P35606 906 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 ELOA2Q8IYF1 753 aaPredicted RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 CCDC170Q8IYT3 715 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 FNBP4Q8N3X1 1017 aaPredicted RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 TACO1Q9BSH4 297 aaKnown RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 SUFUQ9UMX1 484 aa12.51□□□□□ -0.41
LDLR-208ENST00000558518 MYO5AQ9Y4I1 1855 aaKnown RBP12.51□□□□□ -0.41
LDLR-208ENST00000558518 OPLAHO14841 1288 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 PPP1R37O75864 691 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TSPY3P0CV98 308 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TSPY8P0CW00 308 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 PRDX5P30044 214 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 NPY5RQ15761 445 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 LRRC15Q8TF66 581 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TCP11Q8WWU5 503 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 CASKIN2Q8WXE0 1202 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 ODF2LQ9ULJ1 636 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 ANO9A1A5B4 782 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 RAD51CO43502 376 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 NEBLO76041 1014 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 CLTAP09496 248 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 KLRC1P26715 233 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 CLNS1AP54105 237 aaKnown RBP12.5□□□□□ -0.41
LDLR-208ENST00000558518 SAMD1Q6SPF0 538 aaPredicted RBP12.5□□□□□ -0.41
LDLR-208ENST00000558518 SPAG5Q96R06 1193 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 PLCD4Q9BRC7 762 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TLR10Q9BXR5 811 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 KLC4Q9NSK0 619 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TMEM260Q9NX78 707 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 MST1RQ04912 1400 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 MROH5Q6ZUA9 1318 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 CALML3P27482 149 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TNNI2P48788 182 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 VWA3BQ502W6 1294 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 EMBQ6PCB8 327 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 TRMT1LQ7Z2T5 733 aaKnown RBP12.5□□□□□ -0.41
LDLR-208ENST00000558518 CCDC13Q8IYE1 715 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 MGARPQ8TDB4 240 aa12.5□□□□□ -0.41
LDLR-208ENST00000558518 A0A1W2PQC6 194 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms