RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 MYO5BQ9ULV0 1848 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 PLSCR1O15162 318 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 PAPLNO95428 1278 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 RAC2P15153 192 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 AFMP43652 599 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 BBS9Q3SYG4 887 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 BTG4Q9NY30 223 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 ZNF214Q9UL59 606 aaPredicted RBP8.68□□□□□ -1.02
RTF1-204ENST00000558117 MINPP1Q9UNW1 487 aa8.68□□□□□ -1.02
RTF1-204ENST00000558117 SIGLEC6O43699 453 aa8.67□□□□□ -1.02
RTF1-204ENST00000558117 PRAMEF1O95521 474 aa8.67□□□□□ -1.02
RTF1-204ENST00000558117 GDNFP39905 211 aa8.67□□□□□ -1.02
RTF1-204ENST00000558117 AUHQ13825 339 aaKnown RBP8.67□□□□□ -1.02
RTF1-204ENST00000558117 AXDND1Q5T1B0 1012 aaPredicted RBP8.67□□□□□ -1.02
RTF1-204ENST00000558117 ZNF655Q8N720 491 aaPredicted RBP8.67□□□□□ -1.02
RTF1-204ENST00000558117 DHX38Q92620 1227 aaKnown RBP8.67□□□□□ -1.02
RTF1-204ENST00000558117 CHST7Q9NS84 486 aa8.67□□□□□ -1.02
RTF1-204ENST00000558117 WDR90Q96KV7 1748 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 DUOX2Q9NRD8 1548 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 LRPPRCP42704 1394 aaKnown RBP8.66□□□□□ -1.02
RTF1-204ENST00000558117 DNAJC25-GNG10A0A024R161 153 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 SHOXO15266 292 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 TOMM70O94826 608 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 HK2P52789 917 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 PCBP3P57721 371 aaKnown RBP8.66□□□□□ -1.02
RTF1-204ENST00000558117 RALGPS1Q5JS13 557 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 DCAF15Q66K64 600 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 RNF111Q6ZNA4 994 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 C7orf61Q8IZ16 206 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 NLGN2Q8NFZ4 835 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 FAM168AQ92567 244 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 TCTN2Q96GX1 697 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 DSCC1Q9BVC3 393 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 PHAXQ9H814 394 aaKnown RBP8.66□□□□□ -1.02
RTF1-204ENST00000558117 GFOD1Q9NXC2 390 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 RNF114Q9Y508 228 aa8.66□□□□□ -1.02
RTF1-204ENST00000558117 NRXN3Q9Y4C0 1643 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 KANK1Q14678 1352 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 MEIS1O00470 390 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 SLC15A2Q16348 729 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 KCNMB1Q16558 191 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 GNPTABQ3T906 1256 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 ZSWIM9Q86XI8 627 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 KLHL6Q8WZ60 621 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 PRR13Q9NZ81 148 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 PRKAG3Q9UGI9 489 aa8.65□□□□□ -1.02
RTF1-204ENST00000558117 GCC2Q8IWJ2 1684 aa8.65□□□□□ -1.03
RTF1-204ENST00000558117 DUSP4Q13115 394 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 KIRREL1Q96J84 757 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 FOXP3Q9BZS1 431 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 TANGO6Q9C0B7 1094 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 ADAMTS10Q9H324 1103 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 TCFL5Q9UL49 500 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 ZNF451Q9Y4E5 1061 aa8.64□□□□□ -1.03
RTF1-204ENST00000558117 SPATA31A1Q5TZJ5 1347 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 SYPP08247 313 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 RPL10P27635 214 aaKnown RBP8.63□□□□□ -1.03
RTF1-204ENST00000558117 RGS19P49795 217 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 TEKQ02763 1124 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 ANKRD39Q53RE8 183 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 NOL9Q5SY16 702 aaKnown RBP8.63□□□□□ -1.03
RTF1-204ENST00000558117 STK32BQ9NY57 414 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 ACTR10Q9NZ32 417 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 EEA1Q15075 1411 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 CEP162Q5TB80 1403 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 ERBINQ96RT1 1412 aa8.63□□□□□ -1.03
RTF1-204ENST00000558117 RRBP1Q9P2E9 1410 aaKnown RBP8.63□□□□□ -1.03
RTF1-204ENST00000558117 SLC7A5Q01650 507 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 TCEAL1Q15170 157 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 KRT28Q7Z3Y7 464 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 WAPLQ7Z5K2 1190 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 OXR1Q8N573 874 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 USHBP1Q8N6Y0 703 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 PDZD8Q8NEN9 1154 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 HNRNPLLQ8WVV9 542 aaKnown RBP8.62□□□□□ -1.03
RTF1-204ENST00000558117 C19orf73Q9NVV2 129 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 ZMYM5Q9UJ78 669 aa8.62□□□□□ -1.03
RTF1-204ENST00000558117 RGPD3A6NKT7 1758 aaPredicted RBP8.61□□□□□ -1.03
RTF1-204ENST00000558117 RGPD4Q7Z3J3 1758 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 CBFA2T2O43439 604 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 FKTNO75072 461 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 ZGLP1P0C6A0 271 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 ITGA4P13612 1032 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 CD247P20963 164 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 ENDOUP21128 410 aaKnown RBP8.61□□□□□ -1.03
RTF1-204ENST00000558117 TNNI3KQ59H18 835 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 LARP1BQ659C4 914 aaKnown RBP8.61□□□□□ -1.03
RTF1-204ENST00000558117 CWF19L1Q69YN2 538 aaKnown RBP8.61□□□□□ -1.03
RTF1-204ENST00000558117 KIAA1211LQ6NV74 962 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 VHLLQ6RSH7 139 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 ANKS3Q6ZW76 656 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 LINC00116Q8NCU8 138 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 MICAL1Q8TDZ2 1067 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 MYLIPQ8WY64 445 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 GP6Q9HCN6 339 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 TNS3Q68CZ2 1445 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 KIF15Q9NS87 1388 aa8.61□□□□□ -1.03
RTF1-204ENST00000558117 ZNF445P59923 1031 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 TMEM67Q5HYA8 995 aa8.6□□□□□ -1.03
RTF1-204ENST00000558117 PTF1AQ7RTS3 328 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms