RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ECT2Q9H8V3 914 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 CCDC87Q9NVE4 849 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 POLR3EQ9NVU0 708 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 CLIC4Q9Y696 253 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 FER1L4A9Z1Z3 1794 aa15.16■□□□□ 0.02
SHMT2-226ENST00000556825 JCADQ9P266 1359 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 GCOM1H8Y6P7 765 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 MYZAPP0CAP1 466 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 TRIM21P19474 475 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 CALB2P22676 271 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 VARSP26640 1264 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 CDC27P30260 824 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 SYKP43405 635 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 SERPINB4P48594 390 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 ZC3H6P61129 1189 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 GUCY1B3Q02153 619 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 HAUS3Q68CZ6 603 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 TMEM53Q6P2H8 277 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 GIGYF2Q6Y7W6 1299 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 IFT20Q8IY31 132 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 DNAJC9Q8WXX5 260 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 ABHD8Q96I13 439 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 SMC6Q96SB8 1091 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 PDP2Q9P2J9 529 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 HSFX1Q9UBD0 423 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 RABL2BQ9UNT1 228 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 REXO2Q9Y3B8 237 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 SPO11Q9Y5K1 396 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 CRYBG1Q9Y4K1 1723 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 C3P01024 1663 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 HTR3EA5X5Y0 456 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 FXR1P51114 621 aaKnown RBP eCLIP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 PSMC1P62191 440 aaKnown RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 LONRF3Q496Y0 759 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 TBC1D9BQ66K14 1250 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF662Q6ZS27 426 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 CREG2Q8IUH2 290 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 SPATA4Q8NEY3 305 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 IFT74Q96LB3 600 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 TCHPQ9BT92 498 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 RAB17Q9H0T7 212 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 NKX1-2Q9UD57 310 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 IQSEC3Q9UPP2 1182 aaPredicted RBP15.15■□□□□ 0.02
SHMT2-226ENST00000556825 ZNF148Q9UQR1 794 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 ITM2BQ9Y287 266 aa15.15■□□□□ 0.02
SHMT2-226ENST00000556825 METP08581 1390 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 CETN3O15182 167 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 GYPCP04921 128 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 FAM153BP0C7A2 387 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 BMP6P22004 513 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 RAD23BP54727 409 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 FMR1Q06787 632 aaKnown RBP eCLIP15.14■□□□□ 0.012e-11■■■■□ 22.1
SHMT2-226ENST00000556825 FAM153CQ494X1 144 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 RASIP1Q5U651 963 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 TCERG1LQ5VWI1 586 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 LSM14AQ8ND56 463 aaKnown RBP15.14■□□□□ 0.01
SHMT2-226ENST00000556825 ANKRD24Q8TF21 1146 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 CENPTQ96BT3 561 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 KLHL29Q96CT2 875 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 SPATA16Q9BXB7 569 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 MIS12Q9H081 205 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 RNPEPL1Q9HAU8 725 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 FAM153AQ9UHL3 310 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 ZMYND8Q9ULU4 1186 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-226ENST00000556825 PLAAQ9Y263 795 aa15.14■□□□□ 0.01
SHMT2-226ENST00000556825 EPN1Q9Y6I3 576 aaPredicted RBP15.14■□□□□ 0.01
SHMT2-226ENST00000556825 A0A0J9YVX5 310 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 ALDH1L1O75891 902 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 ASLP04424 464 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 CLCN2P51788 898 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 NEK2P51955 445 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 CACNA2D1P54289 1103 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 GUCY2DQ02846 1103 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.13■□□□□ 0.012e-6■■■■■ 41.4
SHMT2-226ENST00000556825 LENG1Q96BZ8 264 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 PHACTR3Q96KR7 559 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 PLCB1Q9NQ66 1216 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 GDF3Q9NR23 364 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 SAMSN1Q9NSI8 373 aaKnown RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 ABHD10Q9NUJ1 306 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 CNOT8Q9UFF9 292 aaKnown RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 DACH1Q9UI36 760 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 STK38LQ9Y2H1 464 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 CDC42BPGQ6DT37 1551 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 ITIH6Q6UXX5 1313 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 ANKRD26Q9UPS8 1709 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 hCG_2014768A0A024R1R8 64 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 NDUFA10O95299 355 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 GALNTL6Q49A17 601 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 AGBL2Q5U5Z8 902 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 DUS1LQ6P1R4 473 aaKnown RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 APTXQ7Z2E3 356 aaKnown RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 RNF10Q8N5U6 811 aaKnown RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 DEPTORQ8TB45 409 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 UCMAQ8WVF2 138 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 RNF25Q96BH1 459 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 SUCLA2Q9P2R7 463 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-226ENST00000556825 HPSEQ9Y251 543 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 STK24Q9Y6E0 443 aa15.13■□□□□ 0.01
SHMT2-226ENST00000556825 UBOX5O94941 541 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms