RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 BARHL2Q9NY43 387 aa13.47□□□□□ -0.25
CCDC88C-211ENST00000556726 LMO7Q8WWI1 1683 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 CYTH3O43739 400 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 PLCG2P16885 1265 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 HOXA13P31271 388 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 SP4Q02446 784 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 KLHL30Q0D2K2 578 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 CCDC93Q567U6 631 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 FAM26FQ5R3K3 315 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 RNF187Q5TA31 235 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 TAX1BP1Q86VP1 789 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 MYOCDQ8IZQ8 938 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 NDST4Q9H3R1 872 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 PANK4Q9NVE7 773 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 PCDHA1Q9Y5I3 950 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 GOLGA6BA6NDN3 693 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 USP17L10C9JJH3 530 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 ORC4O43929 436 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 RASA1P20936 1047 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 ABCB4P21439 1286 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 EEF1GP26641 437 aaKnown RBP13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 TBX2Q13207 712 aaPredicted RBP13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 TRIM9Q9C026 710 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 VEZTQ9HBM0 779 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 ADAMTS1Q9UHI8 967 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 C5P01031 1676 aa13.46□□□□□ -0.25
CCDC88C-211ENST00000556726 GOLGA6L10A6NI86 522 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 LRRC53A6NM62 1247 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 H3BQF6 201 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 ARL6IP4Q66PJ3 421 aaKnown RBP13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 PDXDC2PQ6P474 469 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 FAM133AQ8N9E0 248 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 AFAP1L1Q8TED9 768 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 GOLPH3Q9H4A6 298 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 SPATA31A1Q5TZJ5 1347 aa13.46□□□□□ -0.26
CCDC88C-211ENST00000556726 RNF40O75150 1001 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 RPS6KA4O75676 772 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 KIAA0753Q2KHM9 967 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 TNS2Q63HR2 1409 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 RCSD1Q6JBY9 416 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 CCDC174Q6PII3 467 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 RBM17Q96I25 401 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 MAD2L2Q9UI95 211 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 CEP104O60308 925 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GCNT3O95395 438 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 KIF11P52732 1056 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GRAPQ13588 217 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GRM4Q14833 912 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 CCDC65Q8IXS2 484 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GRAPLQ8TC17 118 aaPredicted RBP13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 TBC1D5Q92609 795 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GOLGA6CA6NDK9 693 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 STXBP3O00186 592 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 TOM1O60784 492 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 HSF2BPO75031 334 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GOLGA6DP0CG33 693 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GLIS3Q8NEA6 775 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 CUL5Q93034 780 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 GOLGA6AQ9NYA3 693 aa13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 LIMA1Q9UHB6 759 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 SCAF8Q9UPN6 1271 aaKnown RBP13.45□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEB3A0JP26 581 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 POTECB2RU33 542 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 SEMA3EO15041 775 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 PCP11498 1178 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 KCNJ6P48051 423 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 ADAM9Q13443 819 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 ARHGAP44Q17R89 818 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 SLC9C1Q4G0N8 1177 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 CDKAL1Q5VV42 579 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 POTEBQ6S5H4 581 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 TPH2Q8IWU9 490 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 KIFC2Q96AC6 838 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 MS4A14Q96JA4 679 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 NUP58Q9BVL2 599 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 TLDC2A0PJX2 215 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 MYMKA6NI61 221 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 TRIM37O94972 964 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 ZBED6P86452 979 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 DHTKD1Q96HY7 919 aaPredicted RBP13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 PODXL2Q9NZ53 605 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 ANAPC4Q9UJX5 808 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 SSR1P43307 286 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 FUT2Q10981 343 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 RBM26Q5T8P6 1007 aaKnown RBP13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 SFMBT2Q5VUG0 894 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 FAM76AQ8TAV0 307 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 NOX5Q96PH1 765 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 FUT8Q9BYC5 575 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 SERPINB13Q9UIV8 391 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 HYOU1Q9Y4L1 999 aa13.44□□□□□ -0.26
CCDC88C-211ENST00000556726 KCNK3O14649 394 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 CETN3O15182 167 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 SLC37A4O43826 429 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 GUCY2DQ02846 1103 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 EZH2Q15910 746 aaKnown RBP13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 MICALL1Q8N3F8 863 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 HOMER2Q9NSB8 354 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 PCDHA13Q9Y5I0 950 aa13.43□□□□□ -0.26
CCDC88C-211ENST00000556726 GOLGB1Q14789 3259 aaKnown RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms