RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MRPS23Q9Y3D9 190 aaKnown RBP6.96□□□□□ -1.3
SCFD1-221ENST00000556534 NUDT19A8MXV4 375 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 MSCO60682 206 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 PLEKHN1Q494U1 663 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-221ENST00000556534 ZC3H12BQ5HYM0 836 aaKnown RBP6.95□□□□□ -1.3
SCFD1-221ENST00000556534 STYK1Q6J9G0 422 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 RSPO2Q6UXX9 243 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-221ENST00000556534 RPTNQ6XPR3 784 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 ZNF605Q86T29 641 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 TEX2Q8IWB9 1127 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 SCUBE1Q8IWY4 988 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 POU5F2Q8N7G0 328 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 ZSWIM2Q8NEG5 633 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 DCAF4Q8WV16 495 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 SLC26A8Q96RN1 970 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 KANSL2Q9H9L4 492 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 DCP1AQ9NPI6 582 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-221ENST00000556534 KLHL14Q9P2G3 628 aa6.95□□□□□ -1.3
SCFD1-221ENST00000556534 TIMM13Q9Y5L4 95 aaPredicted RBP6.95□□□□□ -1.3
SCFD1-221ENST00000556534 ASXL2Q76L83 1435 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 MYOCOSA0A1B0GUC4 107 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 MYO1BO43795 1136 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 CYBBP04839 570 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 MPOP05164 745 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 FPR2P25090 351 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 BCL6P41182 706 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 SQSTM1Q13501 440 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 CBX2Q14781 532 aaPredicted RBP6.94□□□□□ -1.3
SCFD1-221ENST00000556534 WWC2Q6AWC2 1192 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 KCNT2Q6UVM3 1135 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 DHRS4Q9BTZ2 278 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 MCOLN1Q9GZU1 580 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 BTG4Q9NY30 223 aa6.94□□□□□ -1.3
SCFD1-221ENST00000556534 A0A1W2PQJ5 194 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 PEX10O60683 326 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 IGSF3O75054 1194 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 FUCA1P04066 466 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 GTF2A2P52657 109 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 RAB3GAP1Q15042 981 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 PAQR3Q6TCH7 311 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 CABP7Q86V35 215 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 NETO2Q8NC67 525 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 FBXO15Q8NCQ5 510 aaPredicted RBP6.93□□□□□ -1.3
SCFD1-221ENST00000556534 SH3TC2Q8TF17 1288 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 ZFYVE21Q9BQ24 234 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 CDIP1Q9H305 208 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 PCDHA2Q9Y5H9 948 aa6.93□□□□□ -1.3
SCFD1-221ENST00000556534 VIPR1P32241 457 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 MAPKAPK2P49137 400 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 LSAMPQ13449 338 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 NR1I3Q14994 352 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 JAZF1Q86VZ6 243 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 PPARGC1AQ9UBK2 798 aaKnown RBP6.92□□□□□ -1.3
SCFD1-221ENST00000556534 HCFC2Q9Y5Z7 792 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 X6R8D5 127 aa6.92□□□□□ -1.3
SCFD1-221ENST00000556534 C22orf46C9J442 243 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 H7BY64 318 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 ABLIM1O14639 778 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 FARP2O94887 1054 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 GPR85P60893 370 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 TMEM62Q0P6H9 643 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 ZNF648Q5T619 568 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 LBX2Q6XYB7 198 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 MAMDC2Q7Z304 686 aaPredicted RBP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 RIOX2Q8IUF8 465 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 TMEM169Q96HH4 297 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 RNPC3Q96LT9 517 aaKnown RBP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 IPO9Q96P70 1041 aaKnown RBP6.91□□□□□ -1.3
SCFD1-221ENST00000556534 RXFP1Q9HBX9 757 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 TRAF6Q9Y4K3 522 aa6.91□□□□□ -1.3
SCFD1-221ENST00000556534 ZC3H12DA2A288 527 aaKnown RBP6.9□□□□□ -1.3
SCFD1-221ENST00000556534 SEMA7AO75326 666 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 NTRK1P04629 796 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 LCE3BQ5TA77 95 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 OLFML2BQ68BL8 750 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 CEP68Q76N32 757 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 TMC6Q7Z403 805 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 USP33Q8TEY7 942 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 PTPRN2Q92932 1015 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 FAM84AQ96KN4 292 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 TMEM260Q9NX78 707 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 CLDND1Q9NY35 253 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 MBD1Q9UIS9 605 aaPredicted RBP6.9□□□□□ -1.3
SCFD1-221ENST00000556534 PLA2G2DQ9UNK4 145 aa6.9□□□□□ -1.3
SCFD1-221ENST00000556534 TEX51A0A1B0GUA7 166 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 KRT1P04264 644 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 FBLN1P23142 703 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 SLC6A11P48066 632 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 GABREP78334 506 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 SRSF3P84103 164 aaKnown RBP6.89□□□□□ -1.31
SCFD1-221ENST00000556534 KIZQ2M2Z5 673 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 TRIM61Q5EBN2 209 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 MROH9Q5TGP6 573 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 ZC3H14Q6PJT7 736 aaKnown RBP6.89□□□□□ -1.31
SCFD1-221ENST00000556534 DCP2Q8IU60 420 aaKnown RBP6.89□□□□□ -1.31
SCFD1-221ENST00000556534 IFNL3Q8IZI9 196 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 GSTCDQ8NEC7 633 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 TSPAN17Q96FV3 270 aa6.89□□□□□ -1.31
SCFD1-221ENST00000556534 TRMT2BQ96GJ1 504 aaKnown RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms