RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 NTRK1P04629 796 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 NASPP49321 788 aaPredicted RBP6.39□□□□□ -1.39
SCFD1-219ENST00000556413 KIAA1211LQ6NV74 962 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 HHIPL2Q6UWX4 724 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 COPS5Q92905 334 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 BORCS6Q96GS4 357 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 LNPKQ9C0E8 428 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 CLEC1BQ9P126 229 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 APEX2Q9UBZ4 518 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 CNOT11Q9UKZ1 510 aaKnown RBP6.39□□□□□ -1.39
SCFD1-219ENST00000556413 AKT3Q9Y243 479 aa6.39□□□□□ -1.39
SCFD1-219ENST00000556413 ANKRD34BA5PLL1 514 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 K7ESM1 405 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 CNR2P34972 360 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 GJA8P48165 433 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 SARSP49591 514 aaKnown RBP6.38□□□□□ -1.39
SCFD1-219ENST00000556413 MFAP1P55081 439 aaKnown RBP6.38□□□□□ -1.39
SCFD1-219ENST00000556413 CASP7P55210 303 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 GJA9P57773 515 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 MBLAC2Q68D91 279 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 VHLLQ6RSH7 139 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 ZNF761Q86XN6 746 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-219ENST00000556413 LINC00482Q8N8I6 264 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 PLEKHO2Q8TD55 490 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 ZBTB8AQ96BR9 441 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 DDX11Q96FC9 970 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 GPRC5CQ9NQ84 441 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 NTMQ9P121 344 aa6.38□□□□□ -1.39
SCFD1-219ENST00000556413 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.38□□□□□ -1.39
SCFD1-219ENST00000556413 KCNH1O95259 989 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 C8BP07358 591 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 PLS3P13797 630 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 SCRN1Q12765 414 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 SMAD4Q13485 552 aaKnown RBP6.37□□□□□ -1.39
SCFD1-219ENST00000556413 ZXDCQ2QGD7 858 aaPredicted RBP6.37□□□□□ -1.39
SCFD1-219ENST00000556413 FAM169BQ8N8A8 192 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 DPF3Q92784 378 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 MMP19Q99542 508 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 EMC9Q9Y3B6 208 aa6.37□□□□□ -1.39
SCFD1-219ENST00000556413 TTLL7Q6ZT98 887 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 NT5DC4Q86YG4 428 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 BVESQ8NE79 360 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 CPLX3Q8WVH0 158 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 SYT3Q9BQG1 590 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 GORASP1Q9BQQ3 440 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 MARCH2Q9P0N8 246 aa6.36□□□□□ -1.39
SCFD1-219ENST00000556413 CYP2C8P10632 490 aa6.35□□□□□ -1.39
SCFD1-219ENST00000556413 INSRRP14616 1297 aa6.35□□□□□ -1.39
SCFD1-219ENST00000556413 HDLBPQ00341 1268 aaKnown RBP6.35□□□□□ -1.39
SCFD1-219ENST00000556413 C9orf131Q5VYM1 1079 aa6.35□□□□□ -1.39
SCFD1-219ENST00000556413 DCP2Q8IU60 420 aaKnown RBP6.35□□□□□ -1.39
SCFD1-219ENST00000556413 ADAMTS17Q8TE56 1095 aa6.35□□□□□ -1.39
SCFD1-219ENST00000556413 APBA2Q99767 749 aa6.35□□□□□ -1.39
SCFD1-219ENST00000556413 ZBTB7CA1YPR0 619 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 SGSM2O43147 1006 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 SMARCA5O60264 1052 aaPredicted RBP6.34□□□□□ -1.39
SCFD1-219ENST00000556413 ITGB3P05106 788 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 THBDP07204 575 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 RBM10P98175 930 aaKnown RBP6.34□□□□□ -1.39
SCFD1-219ENST00000556413 ZNF827Q17R98 1081 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 INF2Q27J81 1249 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 POMZP3Q6PJE2 187 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 ETV3LQ6ZN32 361 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 CRACR2BQ8N4Y2 399 aaPredicted RBP6.34□□□□□ -1.39
SCFD1-219ENST00000556413 FAM26EQ8N5C1 309 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 RBM15Q96T37 977 aaKnown RBP eCLIP6.34□□□□□ -1.39
SCFD1-219ENST00000556413 C11orf84Q9BUA3 381 aaPredicted RBP6.34□□□□□ -1.39
SCFD1-219ENST00000556413 LGR4Q9BXB1 951 aa6.34□□□□□ -1.39
SCFD1-219ENST00000556413 NOP56O00567 594 aaKnown RBP6.33□□□□□ -1.4
SCFD1-219ENST00000556413 THBS2P35442 1172 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 MAGEA10P43363 369 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-219ENST00000556413 ZNF143P52747 638 aaPredicted RBP6.33□□□□□ -1.4
SCFD1-219ENST00000556413 CYP4F3Q08477 520 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 GTF2IRD2BQ6EKJ0 949 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 GTF2IRD2Q86UP8 949 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 MIB1Q86YT6 1006 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 TEX2Q8IWB9 1127 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 SEC16BQ96JE7 1060 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 GPR20Q99678 358 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 AP5M1Q9H0R1 490 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 CYP26B1Q9NR63 512 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 BTG4Q9NY30 223 aa6.33□□□□□ -1.4
SCFD1-219ENST00000556413 C22orf46C9J442 243 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 RPL13P26373 211 aaKnown RBP6.32□□□□□ -1.4
SCFD1-219ENST00000556413 PUM1Q14671 1186 aaKnown RBP eCLIP6.32□□□□□ -1.4
SCFD1-219ENST00000556413 CD300LDQ6UXZ3 194 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 TRIM59Q8IWR1 403 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 KYQ8NBH2 561 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 FRS2Q8WU20 508 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 MRGPRX3Q96LB0 322 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 NKX2-4Q9H2Z4 354 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 PCDH18Q9HCL0 1135 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 PALD1Q9ULE6 856 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 MYRFQ9Y2G1 1151 aa6.32□□□□□ -1.4
SCFD1-219ENST00000556413 NCAPHQ15003 741 aa6.31□□□□□ -1.4
SCFD1-219ENST00000556413 RGL3Q3MIN7 710 aa6.31□□□□□ -1.4
SCFD1-219ENST00000556413 STK32CQ86UX6 486 aa6.31□□□□□ -1.4
SCFD1-219ENST00000556413 NPLOC4Q8TAT6 608 aa6.31□□□□□ -1.4
SCFD1-219ENST00000556413 SEC14L1Q92503 715 aa6.31□□□□□ -1.4
SCFD1-219ENST00000556413 TMPRSS5Q9H3S3 457 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms