RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 PTPDC1A2A3K4 754 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 HMGB1P1B2RPK0 211 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 SART1O43290 800 aaKnown RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 GAS2O43903 313 aaKnown RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 CKMP06732 381 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 GRIK1P39086 918 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 SEPHS1P49903 392 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 ST5P78524 1137 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 NMIQ13287 307 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 PICALMQ13492 652 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 DHX8Q14562 1220 aaKnown RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 KIZQ2M2Z5 673 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 PGM2L1Q6PCE3 622 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 KSR1Q8IVT5 923 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 USP33Q8TEY7 942 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 DIO2Q92813 273 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 ARPC5LQ9BPX5 153 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 BSDC1Q9NW68 430 aaPredicted RBP7.4□□□□□ -1.22
SCFD1-208ENST00000553278 USP25Q9UHP3 1055 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 ZNF652Q9Y2D9 606 aa7.4□□□□□ -1.22
SCFD1-208ENST00000553278 TERTO14746 1132 aaKnown RBP7.39□□□□□ -1.23
SCFD1-208ENST00000553278 ERC2O15083 957 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 DNM2P50570 870 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 MECP2P51608 486 aaKnown RBP7.39□□□□□ -1.23
SCFD1-208ENST00000553278 KRT85P78386 507 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 PCBP2Q15366 365 aaKnown RBP eCLIP7.39□□□□□ -1.23
SCFD1-208ENST00000553278 DDB1Q16531 1140 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 ARHGAP44Q17R89 818 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 DTWD2Q8NBA8 298 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 CLRN3Q8NCR9 226 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 C1orf162Q8NEQ5 155 aaPredicted RBP7.39□□□□□ -1.23
SCFD1-208ENST00000553278 ENOX1Q8TC92 643 aaKnown RBP7.39□□□□□ -1.23
SCFD1-208ENST00000553278 SLC5A5Q92911 643 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 FAXDC2Q96IV6 333 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 MCMBPQ9BTE3 642 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 SARGQ9BW04 601 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 VTA1Q9NP79 307 aa7.39□□□□□ -1.23
SCFD1-208ENST00000553278 CCDC66A2RUB6 948 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 MSCO60682 206 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 FOSP01100 380 aaPredicted RBP7.38□□□□□ -1.23
SCFD1-208ENST00000553278 LTFP02788 710 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 RBP3P10745 1247 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 PLS3P13797 630 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 MORC3Q14149 939 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 RALBP1Q15311 655 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 CLEC16AQ2KHT3 1053 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 C2orf69Q8N8R5 385 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 PJA1Q8NG27 643 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 FBXW5Q969U6 566 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 TIFAQ96CG3 184 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 PSMG3-AS1Q96PY0 264 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 CEP41Q9BYV8 373 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 SEMA6CQ9H3T2 930 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 LGR6Q9HBX8 967 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 GPATCH2Q9NW75 528 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 C14orf119Q9NWQ9 140 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 MKS1Q9NXB0 559 aa7.38□□□□□ -1.23
SCFD1-208ENST00000553278 TMEFF2Q9UIK5 374 aaPredicted RBP7.38□□□□□ -1.23
SCFD1-208ENST00000553278 FAM47E-STBD1D6RA91 191 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 FZD9O00144 591 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 WNT9AO14904 365 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 SH3BP5O60239 455 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 NFICP08651 508 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 KIR3DL1P43629 444 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 PREPP48147 710 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 TRIM28Q13263 835 aaKnown RBP7.37□□□□□ -1.23
SCFD1-208ENST00000553278 GBX1Q14549 363 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 ARHGAP29Q52LW3 1261 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 CRTC3Q6UUV7 619 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 OVCH1Q7RTY7 1134 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 AMOTL1Q8IY63 956 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 TMEM130Q8N3G9 435 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 TOP6BLQ8N6T0 577 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 EFHBQ8N7U6 833 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 HSPBAP1Q96EW2 488 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 AIFM3Q96NN9 605 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 NUP88Q99567 741 aaPredicted RBP7.37□□□□□ -1.23
SCFD1-208ENST00000553278 OXSMQ9NWU1 459 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 CLEC1BQ9P126 229 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 ZBTB21Q9ULJ3 1066 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 MINPP1Q9UNW1 487 aa7.37□□□□□ -1.23
SCFD1-208ENST00000553278 TRBV23OR9-2A0A075B6M9 112 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 F8W735 103 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-208ENST00000553278 IL33O95760 270 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 EOMESO95936 686 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 SOD2P04179 222 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 IFNGR1P15260 489 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 ELNP15502 786 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 PHKG2P15735 406 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 PAX3P23760 479 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 CTSKP43235 329 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 SFRP5Q5T4F7 317 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 C10orf62Q5T681 223 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-208ENST00000553278 BROXQ5VW32 411 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 EEF1DP3Q658K8 133 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 IL31Q6EBC2 164 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 RCSD1Q6JBY9 416 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 CDPF1Q6NVV7 123 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 C16orf59Q7L2K0 433 aa7.36□□□□□ -1.23
SCFD1-208ENST00000553278 CCDC103Q8IW40 242 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms