RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HHIPL1Q96JK4 782 aa6.9□□□□□ -1.3
LIMA1-205ENST00000550592 MTFR1LQ9H019 292 aa6.9□□□□□ -1.3
LIMA1-205ENST00000550592 ADAMTS10Q9H324 1103 aa6.9□□□□□ -1.3
LIMA1-205ENST00000550592 PCDHA2Q9Y5H9 948 aa6.9□□□□□ -1.3
LIMA1-205ENST00000550592 WNT9AO14904 365 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 NPHS1O60500 1241 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 POU3F3P20264 500 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-205ENST00000550592 FLT3P36888 993 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 GTF2A2P52657 109 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 ANAPC15P60006 121 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 RBM10P98175 930 aaKnown RBP6.89□□□□□ -1.31
LIMA1-205ENST00000550592 PAK1Q13153 545 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 LSAMPQ13449 338 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 ZNF460Q14592 562 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 NFXL1Q6ZNB6 911 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 PCDH19Q8TAB3 1148 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 DPF3Q92784 378 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 ALPK1Q96QP1 1244 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 ALG1Q9BT22 464 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 CDIP1Q9H305 208 aa6.89□□□□□ -1.31
LIMA1-205ENST00000550592 EIF4G1Q04637 1599 aaKnown RBP6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ERCC6Q03468 1493 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 MYO1BO43795 1136 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 JMJD7P0C870 316 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 CNGA1P29973 690 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 RPL11P62913 178 aaKnown RBP6.88□□□□□ -1.31
LIMA1-205ENST00000550592 RALGPS1Q5JS13 557 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ZCCHC8Q6NZY4 707 aaKnown RBP6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ABHD17CQ6PCB6 329 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ZNF574Q6ZN55 896 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-205ENST00000550592 UBE2R2Q712K3 238 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-205ENST00000550592 SLCO6A1Q86UG4 719 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ANKLE2Q86XL3 938 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 ORAI3Q9BRQ5 295 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 SLAMF8Q9P0V8 285 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 TMEM59LQ9UK28 342 aa6.88□□□□□ -1.31
LIMA1-205ENST00000550592 PPP1R11O60927 126 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 CKMP06732 381 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 FUT4P22083 530 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 SSTR4P31391 388 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 BCL6P41182 706 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 NEK4P51957 841 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 PCBP1Q15365 356 aaKnown RBP eCLIP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 CFAP100Q494V2 611 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 CDCA2Q69YH5 1023 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 SLC23A3Q6PIS1 610 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 DDX46Q7L014 1031 aaKnown RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 JAMLQ86YT9 394 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 ZC3H7AQ8IWR0 971 aaKnown RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 RPUSD2Q8IZ73 545 aaKnown RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 UBR7Q8N806 425 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 ANKS4BQ8N8V4 417 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 CCDC120Q96HB5 630 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 JMJD8Q96S16 334 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 PAK6Q9NQU5 681 aaPredicted RBP6.87□□□□□ -1.31
LIMA1-205ENST00000550592 ADGRE2Q9UHX3 823 aa6.87□□□□□ -1.31
LIMA1-205ENST00000550592 H7BY64 318 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 SOD2P04179 222 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 CORO7P57737 925 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 RTP1P59025 263 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 NFKB2Q00653 900 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 CT47A1Q5JQC4 288 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-205ENST00000550592 DDX53Q86TM3 631 aaKnown RBP6.86□□□□□ -1.31
LIMA1-205ENST00000550592 KIF18BQ86Y91 864 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 SPPL2CQ8IUH8 684 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 Q8N1Y9 231 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 AFAP1L2Q8N4X5 818 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 ASIC4Q96FT7 647 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 WNK4Q96J92 1243 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 FAM126AQ9BYI3 521 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-205ENST00000550592 SAMD15Q9P1V8 674 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 FBXL7Q9UJT9 491 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 ATP8A1Q9Y2Q0 1164 aa6.86□□□□□ -1.31
LIMA1-205ENST00000550592 WTIPA6NIX2 430 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 NOTOA8MTQ0 251 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 FAM47E-STBD1D6RA91 191 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 GRK2P25098 689 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 GRK3P35626 688 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 CHRNEQ04844 493 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 DHCR24Q15392 516 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 HSF5Q4G112 596 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 PKN3Q6P5Z2 889 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 STRA8Q7Z7C7 330 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 PDZD8Q8NEN9 1154 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 FLCNQ8NFG4 579 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 LEO1Q8WVC0 666 aaPredicted RBP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 CHAMP1Q96JM3 812 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 CELF4Q9BZC1 486 aaKnown RBP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 IPPKQ9H8X2 491 aa6.85□□□□□ -1.31
LIMA1-205ENST00000550592 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 PPARGC1AQ9UBK2 798 aaKnown RBP6.85□□□□□ -1.31
LIMA1-205ENST00000550592 GSTA4O15217 222 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 NRDCO43847 1150 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 KPNA6O60684 536 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 USP2O75604 605 aaPredicted RBP6.84□□□□□ -1.31
LIMA1-205ENST00000550592 EYA4O95677 639 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 SRGAP2CP0DJJ0 459 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 NR0B2Q15466 257 aa6.84□□□□□ -1.31
LIMA1-205ENST00000550592 SEPT7Q16181 437 aaKnown RBP6.84□□□□□ -1.31
LIMA1-205ENST00000550592 PIK3R6Q5UE93 754 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms