RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 DPH5Q9H2P9 285 aa16.27■□□□□ 0.2
HOXC11-202ENST00000546378 TRAF5O00463 557 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 ATP8B1O43520 1251 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 TSPY3P0CV98 308 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 TSPY8P0CW00 308 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 COPB2P35606 906 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 MAGEA9P43362 315 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 CFAP58Q5T655 872 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 HAUS4Q9H6D7 363 aa16.27■□□□□ 0.19
HOXC11-202ENST00000546378 ATRNO75882 1429 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 GTPBP6O43824 516 aaPredicted RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 ZNF658Q5TYW1 1059 aaPredicted RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 BLIDQ8IZY5 108 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 UBLCP1Q8WVY7 318 aaPredicted RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 CD248Q9HCU0 757 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 KCND1Q9NSA2 647 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 LRRC53A6NM62 1247 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 PPFIA4O75335 1185 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 RPSAP08865 295 aaKnown RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 GYS1P13807 737 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 SLC1A4P43007 532 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 NNTQ13423 1086 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 TADA2BQ86TJ2 420 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 CABP7Q86V35 215 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 CHORDC1Q9UHD1 332 aaPredicted RBP16.26■□□□□ 0.19
HOXC11-202ENST00000546378 ADAMTS1Q9UHI8 967 aa16.26■□□□□ 0.19
HOXC11-202ENST00000546378 EN1Q05925 392 aaPredicted RBP16.25■□□□□ 0.19
HOXC11-202ENST00000546378 SPAG1Q07617 926 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 POTEAQ6S8J7 498 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 IRF2BP1Q8IU81 584 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 PNMA1Q8ND90 353 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 TGFBRAP1Q8WUH2 860 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 CCDC47Q96A33 483 aaKnown RBP16.25■□□□□ 0.19
HOXC11-202ENST00000546378 HEXIM1O94992 359 aaKnown RBP16.25■□□□□ 0.19
HOXC11-202ENST00000546378 TMOD1P28289 359 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 POLR2FP61218 127 aaKnown RBP16.25■□□□□ 0.19
HOXC11-202ENST00000546378 TMTC2Q8N394 836 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 KAT2BQ92831 832 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 FERMT2Q96AC1 680 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 COA7Q96BR5 231 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 RNF26Q9BY78 433 aaPredicted RBP16.25■□□□□ 0.19
HOXC11-202ENST00000546378 GPCPD1Q9NPB8 672 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 RWDD2AQ9UIY3 292 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 RIC1Q4ADV7 1423 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 PAPPAQ13219 1627 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 KIF11P52732 1056 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 MSANTD4Q8NCY6 345 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 TBC1D31Q96DN5 1066 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 PHF20Q9BVI0 1012 aa16.25■□□□□ 0.19
HOXC11-202ENST00000546378 NWD2Q9ULI1 1742 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 MYH10P35580 1976 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 PLS1Q14651 629 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 PRR5LQ6MZQ0 368 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 SLC30A10Q6XR72 485 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 TICAM2Q86XR7 235 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 DISC1Q9NRI5 854 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 SF3B3Q15393 1217 aaKnown RBP16.24■□□□□ 0.19
HOXC11-202ENST00000546378 DCAF17Q5H9S7 520 aaPredicted RBP16.24■□□□□ 0.19
HOXC11-202ENST00000546378 ZNF444Q8N0Y2 327 aaPredicted RBP16.24■□□□□ 0.19
HOXC11-202ENST00000546378 SPATA4Q8NEY3 305 aa16.24■□□□□ 0.19
HOXC11-202ENST00000546378 CEP104O60308 925 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 CKAP4Q07065 602 aaKnown RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 DHX9Q08211 1270 aaKnown RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 CCNI2Q6ZMN8 369 aaPredicted RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TRAPPC11Q7Z392 1133 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TXNRD3Q86VQ6 643 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 STAG1Q8WVM7 1258 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 LBHD1Q9BQE6 289 aaPredicted RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 PACSIN1Q9BY11 444 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 SALL4Q9UJQ4 1053 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 PCDHA13Q9Y5I0 950 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 C6orf229H3BNL8 230 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 KCNK3O14649 394 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 ZNF263O14978 683 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 SOGA3Q5TF21 947 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 ALS2CR12Q96Q35 445 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 BSDC1Q9NW68 430 aaPredicted RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 NPHP3-ACAD11A0A0J9YXS1 232 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 GOLGA6L7A0A1B0GV03 622 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TMEM110-MUSTN1A8MSY1 372 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 LGALS16A8MUM7 142 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 SETQ01105 290 aaPredicted RBP16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TROAPQ12815 778 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TMTC3Q6ZXV5 915 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 FAM133AQ8N9E0 248 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 MED4Q9NPJ6 270 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 RMND1Q9NWS8 449 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 RAB21Q9UL25 225 aa16.23■□□□□ 0.19
HOXC11-202ENST00000546378 TBC1D5Q92609 795 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 ZIM3Q96PE6 472 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 MPHOSPH10O00566 681 aaKnown RBP16.22■□□□□ 0.19
HOXC11-202ENST00000546378 GLI1P08151 1106 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 FGFR2P21802 821 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 RDXP35241 583 aaKnown RBP16.22■□□□□ 0.19
HOXC11-202ENST00000546378 VAV2P52735 878 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 SNAP25P60880 206 aa16.22■□□□□ 0.19
HOXC11-202ENST00000546378 LRRC47Q8N1G4 583 aaKnown RBP16.22■□□□□ 0.19
HOXC11-202ENST00000546378 ZNF622Q969S3 477 aaKnown RBP eCLIP16.22■□□□□ 0.19
HOXC11-202ENST00000546378 UBXN6Q9BZV1 441 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms