RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 RMDN3Q96TC7 470 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 SLC12A7Q9Y666 1083 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 ELP1O95163 1332 aa17.15■□□□□ 0.34
USP28-204ENST00000537642 CALM1P0DP23 149 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 CALM2P0DP24 149 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 CALM3P0DP25 149 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 SMARCA1P28370 1054 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 GNAQP50148 359 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 TRAF1Q13077 416 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 KRT32Q14532 448 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 DHX32Q7L7V1 743 aaKnown RBP17.14■□□□□ 0.33
USP28-204ENST00000537642 SRBD1Q8N5C6 995 aaKnown RBP17.14■□□□□ 0.33
USP28-204ENST00000537642 IWS1Q96ST2 819 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 LZTS2Q9BRK4 669 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 PRDM5Q9NQX1 630 aaPredicted RBP17.14■□□□□ 0.33
USP28-204ENST00000537642 PXMP2Q9NR77 195 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 PRKAG2Q9UGJ0 569 aa17.14■□□□□ 0.33
USP28-204ENST00000537642 LAMA3Q16787 3333 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 TRIM43BA6NCK2 446 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 PQBP1O60828 265 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 EIF2AK2P19525 551 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 HOXA13P31271 388 aaPredicted RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 HSPA4P34932 840 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 CDK7P50613 346 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 ARHGEF16Q5VV41 709 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 CXCL17Q6UXB2 119 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 ANKRD33Q7Z3H0 272 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 CMTR1Q8N1G2 835 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 SAMD3Q8N6K7 520 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 SCFD2Q8WU76 684 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 VTI1AQ96AJ9 217 aa17.13■□□□□ 0.33
USP28-204ENST00000537642 TRIM43Q96BQ3 446 aaPredicted RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 RRP36Q96EU6 259 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 UBE2OQ9C0C9 1292 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 MAP3K20Q9NYL2 800 aaKnown RBP17.13■□□□□ 0.33
USP28-204ENST00000537642 A0A0U1RQG5 324 aaPredicted RBP17.12■□□□□ 0.33
USP28-204ENST00000537642 ARIH2O95376 493 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 CLTBP09497 229 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 PPP2R5BQ15173 497 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 STXBP2Q15833 593 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 APOA5Q6Q788 366 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 MICU3Q86XE3 530 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 FANCBQ8NB91 859 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 OR6J1Q8NGC5 347 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 COPS5Q92905 334 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 TOX2Q96NM4 488 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 LBHD1Q9BQE6 289 aaPredicted RBP17.12■□□□□ 0.33
USP28-204ENST00000537642 BRPF3Q9ULD4 1205 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 SNX14Q9Y5W7 946 aa17.12■□□□□ 0.33
USP28-204ENST00000537642 GCOM1H8Y6P7 765 aaPredicted RBP17.11■□□□□ 0.33
USP28-204ENST00000537642 ARVCFO00192 962 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 NKRFO15226 690 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP28-204ENST00000537642 ZEB2O60315 1214 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 REC8O95072 547 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 NR3C2P08235 984 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 POLR2MP0CAP2 368 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 TXNP10599 105 aaKnown RBP17.11■□□□□ 0.33
USP28-204ENST00000537642 CPA1P15085 419 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 ITGB8P26012 769 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 FAAP100Q0VG06 881 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 TTLL4Q14679 1199 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 CCDC62Q6P9F0 684 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 SEPT14Q6ZU15 432 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 TMTC3Q6ZXV5 915 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 PDCD2LQ9BRP1 358 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 SZT2Q5T011 3432 aa17.11■□□□□ 0.33
USP28-204ENST00000537642 DCDC2CA8MYV0 355 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 KIAA0355O15063 1070 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 CABYRO75952 493 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 HMGB1P09429 215 aaKnown RBP17.1■□□□□ 0.33
USP28-204ENST00000537642 SYNE3Q6ZMZ3 975 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 TDHQ8IZJ6 230 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 SLC43A3Q8NBI5 491 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 BADQ92934 168 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 JAKMIP1Q96N16 626 aaKnown RBP17.1■□□□□ 0.33
USP28-204ENST00000537642 SEC63Q9UGP8 760 aaKnown RBP17.1■□□□□ 0.33
USP28-204ENST00000537642 GRIN2DO15399 1336 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 MROH7Q68CQ1 1323 aa17.1■□□□□ 0.33
USP28-204ENST00000537642 hCG_1642624A0A1W2PR95 340 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 EIF3JO75822 258 aaKnown RBP17.09■□□□□ 0.33
USP28-204ENST00000537642 MYCLP12524 364 aaPredicted RBP17.09■□□□□ 0.33
USP28-204ENST00000537642 CPT1AP50416 773 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 PSMC6P62333 389 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 PGM5Q15124 567 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 LY6KQ17RY6 165 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 FCHSD1Q86WN1 690 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 FAM126BQ8IXS8 530 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 CCDC82Q8N4S0 544 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 IL31RAQ8NI17 732 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 TMEM39AQ9NV64 488 aa17.09■□□□□ 0.33
USP28-204ENST00000537642 SCN10AQ9Y5Y9 1956 aa17.08■□□□□ 0.33
USP28-204ENST00000537642 MYH7BA7E2Y1 1941 aa17.08■□□□□ 0.33
USP28-204ENST00000537642 CNTNAP5Q8WYK1 1306 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 KLF18A0A0U1RQI7 1052 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 A6NJR5 290 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 SOX1O00570 391 aaPredicted RBP17.08■□□□□ 0.32
USP28-204ENST00000537642 ZBTB43O43298 467 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 RGS20O76081 388 aa17.08■□□□□ 0.32
USP28-204ENST00000537642 PURAQ00577 322 aaKnown RBP17.08■□□□□ 0.32
USP28-204ENST00000537642 ITGA7Q13683 1181 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms