RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 STXBP3O00186 592 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 CLGNO14967 610 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 CBFA2T2O43439 604 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 VAMP4O75379 141 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 WNT11O96014 354 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 ITGAVP06756 1048 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 PTMSP20962 102 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 ECI1P42126 302 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 HNRNPH2P55795 449 aaKnown RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 BNIP3Q12983 259 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 SLC14A2Q15849 920 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 NKPD1Q17RQ9 610 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 MRM1Q6IN84 353 aaKnown RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 TMED8Q6PL24 325 aaPredicted RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 RNF111Q6ZNA4 994 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 NBPF11Q86T75 865 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 KIF18AQ8NI77 898 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 PI4K2BQ8TCG2 481 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 AARSD1Q9BTE6 412 aaKnown RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 SPATA9Q9BWV2 254 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 TTC12Q9H892 705 aaPredicted RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 CARS2Q9HA77 564 aaKnown RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 UPF2Q9HAU5 1272 aaKnown RBP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 ZNF446Q9NWS9 450 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 SLAMF8Q9P0V8 285 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 BCCIPQ9P287 314 aaKnown RBP eCLIP3.81□□□□□ -1.8
CSDE1-216ENST00000534389 APEX2Q9UBZ4 518 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 MINPP1Q9UNW1 487 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 PLAGL2Q9UPG8 496 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 PCDHA11Q9Y5I1 949 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 ST14Q9Y5Y6 855 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 KIF21AQ7Z4S6 1674 aa3.81□□□□□ -1.8
CSDE1-216ENST00000534389 EPRSP07814 1512 aaKnown RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 PZPP20742 1482 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 RALGAPBQ86X10 1494 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 FYCO1Q9BQS8 1478 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 UHRF1BP1Q6BDS2 1440 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 NINLQ9Y2I6 1382 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 PITPNM2Q9BZ72 1349 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 ERICH4A6NGS2 130 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 AP5Z1O43299 807 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 DHX16O60231 1041 aaKnown RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 SMARCA5O60264 1052 aaPredicted RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 TBC1D8O95759 1140 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CYP2C19P33261 490 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CD96P40200 585 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 GYS2P54840 703 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 DUSP4Q13115 394 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 GRB10Q13322 594 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 SERINC3Q13530 473 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 PKP1Q13835 747 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 RASA3Q14644 834 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CT47A1Q5JQC4 288 aaPredicted RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CC2D1BQ5T0F9 858 aaKnown RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 MCTP1Q6DN14 999 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 LRSAM1Q6UWE0 723 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 SPATC1Q76KD6 591 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 FAM214BQ7L5A3 538 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 ZNF227Q86WZ6 799 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 AGBL5Q8NDL9 886 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 BTN2A2Q8WVV5 523 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 KCTD13Q8WZ19 329 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 VWCEQ96DN2 955 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 SGSM3Q96HU1 749 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 RCC1LQ96I51 464 aaKnown RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 LGR4Q9BXB1 951 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 HDAC8Q9BY41 377 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 DUSP15Q9H1R2 295 aaPredicted RBP3.8□□□□□ -1.8
CSDE1-216ENST00000534389 TMX1Q9H3N1 280 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 PIF1Q9H611 641 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CALCOCO1Q9P1Z2 691 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 LCMT1Q9UIC8 334 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 ARHGEF11O15085 1522 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CLASP1Q7Z460 1538 aa3.8□□□□□ -1.8
CSDE1-216ENST00000534389 CFTRP13569 1480 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 GAPVD1Q14C86 1478 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 FGD5Q6ZNL6 1462 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 NPHP3-ACAD11A0A0J9YXS1 232 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 SYCE3A1L190 88 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 CCDC66A2RUB6 948 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 C2orf71A6NGG8 1288 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 WASH4PA8MWX3 477 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 PRODHO43272 600 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 RAC2P15153 192 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 VAV1P15498 845 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 BMP8BP34820 402 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 HK2P52789 917 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 PPP2R2AP63151 447 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 SCRN1Q12765 414 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 LAPTM5Q13571 262 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 GTF2IRD2BQ6EKJ0 949 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 NSMFQ6X4W1 530 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 ZNF574Q6ZN55 896 aaPredicted RBP3.79□□□□□ -1.8
CSDE1-216ENST00000534389 GTF2IRD2Q86UP8 949 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 HOMER1Q86YM7 354 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 TRIM59Q8IWR1 403 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 ARHGEF39Q8N4T4 335 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 ZSWIM2Q8NEG5 633 aa3.79□□□□□ -1.8
CSDE1-216ENST00000534389 KIAA1524Q8TCG1 905 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms