RNA–Protein interactions for RNA: ENST00000531158.1

CHMP4A-205, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 4

Gene CHMP4A, Length 563 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-205ENST00000531158 FSD1Q9BTV5 496 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 WDR11Q9BZH6 1224 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 NACAP1Q9BZK3 213 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 MTIF3Q9H2K0 278 aaKnown RBP10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 CHMP4BQ9H444 224 aaKnown RBP10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 ANAPC4Q9UJX5 808 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 PCDHB15Q9Y5E8 787 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 MTCH2Q9Y6C9 303 aa10.88□□□□□ -0.67
CHMP4A-205ENST00000531158 FRMPD2Q68DX3 1309 aaPredicted RBP10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 C5orf42Q9H799 3197 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 TSPY2A6NKD2 308 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 ST18O60284 1047 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 LPXNO60711 386 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 ARIH2O95376 493 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 EDNRBP24530 442 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 TCTN1Q2MV58 587 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 NBPF20Q3BBV1 942 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 B4GALNT3Q6L9W6 998 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 RPUSD2Q8IZ73 545 aaKnown RBP10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 GPATCH3Q96I76 525 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 SEZ6LQ9BYH1 1024 aa10.87□□□□□ -0.67
CHMP4A-205ENST00000531158 A6NJR5 290 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 ORC4O43929 436 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 ZEB2O60315 1214 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 RANBP6O60518 1105 aaKnown RBP10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 SLC3A2P08195 630 aaKnown RBP10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 MYL3P08590 195 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 TAP1Q03518 808 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 CCDC96Q2M329 555 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 TMEM67Q5HYA8 995 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 SYDE2Q5VT97 1194 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 TMCO2Q7Z6W1 182 aaPredicted RBP10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 DCAF4Q8WV16 495 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 TMEM47Q9BQJ4 181 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 MTG1Q9BT17 334 aaPredicted RBP10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 KCNH6Q9H252 994 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 CD320Q9NPF0 282 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 COG5Q9UP83 839 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 TRIOO75962 3097 aa10.86□□□□□ -0.67
CHMP4A-205ENST00000531158 MYO7AQ13402 2215 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 PTPDC1A2A3K4 754 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 LCHNA4D1U4 455 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 PITPNM1O00562 1244 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 PFKMP08237 780 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 IQCF3P0C7M6 154 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 PDHBP11177 359 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 MX1P20591 662 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 CALML3P27482 149 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 CPT1AP50416 773 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 RPS6P62753 249 aaKnown RBP10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 HERC6Q8IVU3 1022 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 OR6J1Q8NGC5 347 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 CCDC136Q96JN2 1154 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 PHOX2BQ99453 314 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 CPVLQ9H3G5 476 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 GPCPD1Q9NPB8 672 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 POLR3EQ9NVU0 708 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 ADD3Q9UEY8 706 aaKnown RBP10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 WDFY4Q6ZS81 3184 aa10.85□□□□□ -0.67
CHMP4A-205ENST00000531158 BAZ2BQ9UIF8 2168 aaKnown RBP10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 LOC102724159A0A0B4J2E5 919 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 A0A0D9SFI3 127 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 SUPT20HL2P0C7V6 817 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 SNHG28P0DPA3 235 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 GRB10Q13322 594 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 PWP2Q15269 919 aaKnown RBP10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 FAM47CQ5HY64 1035 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 NFRKBQ6P4R8 1299 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 CCDC62Q6P9F0 684 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 RNF207Q6ZRF8 634 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 ARNTL2Q8WYA1 636 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 TBC1D5Q92609 795 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 DHX38Q92620 1227 aaKnown RBP10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 KAT2BQ92831 832 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 FAM227BQ96M60 508 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 SLC9A7Q96T83 725 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 COL20A1Q9P218 1284 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 RALGAPA2Q2PPJ7 1873 aa10.84□□□□□ -0.67
CHMP4A-205ENST00000531158 GTPBP6O43824 516 aaPredicted RBP10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 FGAP02671 866 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 TOP1P11387 765 aaKnown RBP10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 RFC2P35250 354 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 DEFB103AP81534 67 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 ZNF543Q08ER8 600 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 PPP2R5BQ15173 497 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 ALX1Q15699 326 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 LRRFIP1Q32MZ4 808 aaKnown RBP10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 PPP4R3BQ5MIZ7 849 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 GDF6Q6KF10 455 aaPredicted RBP10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 ZNF589Q86UQ0 364 aaPredicted RBP10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 TBC1D10CQ8IV04 446 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 SCFD2Q8WU76 684 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 HLA-CQ95604 372 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 ANP32EQ9BTT0 268 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 TCP11L1Q9NUJ3 509 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 WDR19Q8NEZ3 1342 aa10.83□□□□□ -0.68
CHMP4A-205ENST00000531158 MMP3P08254 477 aa10.82□□□□□ -0.68
CHMP4A-205ENST00000531158 GOLGA8HP0CJ92 632 aa10.82□□□□□ -0.68
CHMP4A-205ENST00000531158 TXNP10599 105 aaKnown RBP10.82□□□□□ -0.68
CHMP4A-205ENST00000531158 ALADP13716 330 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms