RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 MCM7P33993 719 aa24.08■■□□□ 1.45
VPS28-212ENST00000530836 SP3Q02447 781 aa24.08■■□□□ 1.45
VPS28-212ENST00000530836 ZNF296Q8WUU4 475 aaPredicted RBP24.08■■□□□ 1.45
VPS28-212ENST00000530836 TNMDQ9H2S6 317 aa24.08■■□□□ 1.45
VPS28-212ENST00000530836 MRPL11Q9Y3B7 192 aaKnown RBP24.08■■□□□ 1.45
VPS28-212ENST00000530836 FKTNO75072 461 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 FAM110CQ1W6H9 321 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 SHC4Q6S5L8 630 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 TXNRD2Q9NNW7 524 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 HPSEQ9Y251 543 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 RABGAP1Q9Y3P9 1069 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 ABCB11O95342 1321 aa24.07■■□□□ 1.44
VPS28-212ENST00000530836 A0A1B0GVL5 298 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 PFKFB1P16118 471 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 PRPHP41219 470 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 NDUFA8P51970 172 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 USH1GQ495M9 461 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 SAMD1Q6SPF0 538 aaPredicted RBP24.06■■□□□ 1.44
VPS28-212ENST00000530836 ATG4CQ96DT6 458 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 TIGD1Q96MW7 591 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 MORF4L1Q9UBU8 362 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 FSD2A1L4K1 749 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 PIK3CDO00329 1044 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 ICAM1P05362 532 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 SNAP25P60880 206 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 MB21D1Q8N884 522 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 GPRC5AQ8NFJ5 357 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 CLIC6Q96NY7 704 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 TMEM260Q9NX78 707 aa24.06■■□□□ 1.44
VPS28-212ENST00000530836 VWA5AO00534 786 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 WNT7AO00755 349 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 CNMDO75829 334 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 SYKP43405 635 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 LETM2Q2VYF4 491 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 RBM43Q6ZSC3 357 aaKnown RBP24.05■■□□□ 1.44
VPS28-212ENST00000530836 C4orf32Q8N8J7 132 aa24.05■■□□□ 1.44
VPS28-212ENST00000530836 MEIS2O14770 477 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 CCNT1O60563 726 aaKnown RBP24.04■■□□□ 1.44
VPS28-212ENST00000530836 PEX10O60683 326 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 ZNF202O95125 648 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 GCFC2P16383 781 aaKnown RBP24.04■■□□□ 1.44
VPS28-212ENST00000530836 UBE2SQ16763 222 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 Q3C1V9 767 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 PPP4R3AQ6IN85 833 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 PAGR1Q9BTK6 254 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 BTBD7Q9P203 1132 aa24.04■■□□□ 1.44
VPS28-212ENST00000530836 ZBED4O75132 1171 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 LONP1P36776 959 aaKnown RBP24.03■■□□□ 1.44
VPS28-212ENST00000530836 USP11P51784 963 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 ERVK-9P63128 1117 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 ERVK-24P63145 666 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 L1TD1Q5T7N2 865 aaKnown RBP24.03■■□□□ 1.44
VPS28-212ENST00000530836 CCDC174Q6PII3 467 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 SAMD3Q8N6K7 520 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 CSRNP2Q9H175 543 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 SLC38A10Q9HBR0 1119 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 PRDM10Q9NQV6 1147 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 KCNH3Q9ULD8 1083 aa24.03■■□□□ 1.44
VPS28-212ENST00000530836 CTDP1Q9Y5B0 961 aaPredicted RBP24.03■■□□□ 1.44
VPS28-212ENST00000530836 NEMFO60524 1076 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 LACTBP83111 547 aaPredicted RBP24.02■■□□□ 1.44
VPS28-212ENST00000530836 PYM1Q9BRP8 204 aaKnown RBP24.02■■□□□ 1.44
VPS28-212ENST00000530836 SPDYE3A6NKU9 549 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 CAMK4Q16566 473 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 USP17L6PQ6QN14 398 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 MOXD1Q6UVY6 613 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 DTHD1Q6ZMT9 781 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 ELOA2Q8IYF1 753 aaPredicted RBP24.02■■□□□ 1.44
VPS28-212ENST00000530836 REPS2Q8NFH8 660 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 ERO1AQ96HE7 468 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 SDF4Q9BRK5 362 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 TSPY26PQ9H489 355 aa24.02■■□□□ 1.44
VPS28-212ENST00000530836 TMEM132BQ14DG7 1078 aa24.01■■□□□ 1.43
VPS28-212ENST00000530836 CCDC34Q96HJ3 373 aa24.01■■□□□ 1.43
VPS28-212ENST00000530836 ANO3Q9BYT9 981 aa24.01■■□□□ 1.43
VPS28-212ENST00000530836 CCPG1Q9ULG6 757 aa24.01■■□□□ 1.43
VPS28-212ENST00000530836 VWA3AA6NCI4 1184 aa24■■□□□ 1.43
VPS28-212ENST00000530836 GCOM1H8Y6P7 765 aaPredicted RBP24■■□□□ 1.43
VPS28-212ENST00000530836 POLR2MP0CAP2 368 aa24■■□□□ 1.43
VPS28-212ENST00000530836 OAZ1P54368 228 aa24■■□□□ 1.43
VPS28-212ENST00000530836 KIF22Q14807 665 aa24■■□□□ 1.43
VPS28-212ENST00000530836 MCF2L2Q86YR7 1114 aa24■■□□□ 1.43
VPS28-212ENST00000530836 CD99L2Q8TCZ2 262 aa24■■□□□ 1.43
VPS28-212ENST00000530836 EHMT1Q9H9B1 1298 aa24■■□□□ 1.43
VPS28-212ENST00000530836 MAP3K20Q9NYL2 800 aaKnown RBP24■■□□□ 1.43
VPS28-212ENST00000530836 RLFQ13129 1914 aa24■■□□□ 1.43
VPS28-212ENST00000530836 ZNF536O15090 1300 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 OPLAHO14841 1288 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 OR52Z1P0C646 297 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 CCDC192P0DO97 292 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 MRE11P49959 708 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 CCNA1P78396 465 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 GRIN1Q05586 938 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 GAS2L3Q86XJ1 694 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 AK8Q96MA6 479 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 SPATC1LQ9H0A9 340 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 HOOK1Q9UJC3 728 aaKnown RBP23.99■■□□□ 1.43
VPS28-212ENST00000530836 MRVI1Q9Y6F6 885 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 PSMC4P43686 418 aa23.99■■□□□ 1.43
VPS28-212ENST00000530836 CAP1Q01518 475 aa23.99■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms