RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 WDR11Q9BZH6 1224 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 ADD3Q9UEY8 706 aaKnown RBP12.39□□□□□ -0.43
CD44-227ENST00000528086 MRPL11Q9Y3B7 192 aaKnown RBP12.39□□□□□ -0.43
CD44-227ENST00000528086 SNX14Q9Y5W7 946 aa12.39□□□□□ -0.43
CD44-227ENST00000528086 ELP1O95163 1332 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 PNMA6FA0A0J9YX94 578 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 hCG_1642624A0A1W2PR95 340 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 KIAA0355O15063 1070 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 DHX16O60231 1041 aaKnown RBP12.38□□□□□ -0.43
CD44-227ENST00000528086 CFBP00751 764 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 HSPA4P34932 840 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 GPKOWQ92917 476 aaPredicted RBP eCLIP12.38□□□□□ -0.43
CD44-227ENST00000528086 BADQ92934 168 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 VWCEQ96DN2 955 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 RMDN3Q96TC7 470 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 BCAS3Q9H6U6 928 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 STARD7Q9NQZ5 370 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 PXMP2Q9NR77 195 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 TBX21Q9UL17 535 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 Q9Y3F1 56 aa12.38□□□□□ -0.43
CD44-227ENST00000528086 COL6A3P12111 3177 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 ERICH2A1L162 156 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 ARVCFO00192 962 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 PQBP1O60828 265 aaKnown RBP12.37□□□□□ -0.43
CD44-227ENST00000528086 CD4P01730 458 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 NR3C2P08235 984 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 EIF2AK2P19525 551 aaKnown RBP12.37□□□□□ -0.43
CD44-227ENST00000528086 PSMC6P62333 389 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 ARHGAP1Q07960 439 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 SART3Q15020 963 aaKnown RBP12.37□□□□□ -0.43
CD44-227ENST00000528086 C9orf50Q5SZB4 431 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 TYW1BQ6NUM6 668 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 APOA5Q6Q788 366 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 CASC1Q6TDU7 716 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 DHX32Q7L7V1 743 aaKnown RBP12.37□□□□□ -0.43
CD44-227ENST00000528086 FAM126BQ8IXS8 530 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 TOX2Q96NM4 488 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 PDCD2LQ9BRP1 358 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 MAF1Q9H063 256 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 PPP4R2Q9NY27 417 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 TELO2Q9Y4R8 837 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 FRMPD4Q14CM0 1322 aa12.37□□□□□ -0.43
CD44-227ENST00000528086 A0A1W2PPC1 479 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 MEIS2O14770 477 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 ADAMTS3O15072 1205 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 CLTBP09497 229 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 SMARCA1P28370 1054 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 CDC27P30260 824 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 MRPS9P82933 396 aaKnown RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 PURAQ00577 322 aaKnown RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 SP2Q02086 613 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 PDE4DQ08499 809 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 LY6KQ17RY6 165 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 TMTC3Q6ZXV5 915 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 NOL8Q76FK4 1167 aaKnown RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 VSIG10LQ86VR7 867 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 MCF2L2Q86YR7 1114 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 FANCBQ8NB91 859 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 PCSK9Q8NBP7 692 aaKnown RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 NSUN6Q8TEA1 469 aaKnown RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 CTAGE1Q96RT6 745 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 TRIP12Q14669 1992 aaPredicted RBP12.36□□□□□ -0.43
CD44-227ENST00000528086 UMODL1Q5DID0 1318 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 CNTNAP5Q8WYK1 1306 aa12.36□□□□□ -0.43
CD44-227ENST00000528086 SCN5AQ14524 2016 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 A6NJR5 290 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 SEMA3FQ13275 785 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 PGM5Q15124 567 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 USP17L6PQ6QN14 398 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 SEPT14Q6ZU15 432 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 C16orf59Q7L2K0 433 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 MICU3Q86XE3 530 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 TDHQ8IZJ6 230 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 TMTC2Q8N394 836 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 SCFD2Q8WU76 684 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 KAT2BQ92831 832 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 GLT1D1Q96MS3 346 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 IWS1Q96ST2 819 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 USP26Q9BXU7 913 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 AGXT2Q9BYV1 514 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 UBE2OQ9C0C9 1292 aaKnown RBP12.35□□□□□ -0.43
CD44-227ENST00000528086 TRPV6Q9H1D0 765 aa12.35□□□□□ -0.43
CD44-227ENST00000528086 PRDM5Q9NQX1 630 aaPredicted RBP12.35□□□□□ -0.43
CD44-227ENST00000528086 DDX41Q9UJV9 622 aaKnown RBP12.35□□□□□ -0.43
CD44-227ENST00000528086 TET1Q8NFU7 2136 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 CDH23Q9H251 3354 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 A0A0U1RQG5 324 aaPredicted RBP12.34□□□□□ -0.43
CD44-227ENST00000528086 CCDC69A6NI79 296 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 TXNP10599 105 aaKnown RBP12.34□□□□□ -0.43
CD44-227ENST00000528086 ITGA7Q13683 1181 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 SHHQ15465 462 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 LRIT3Q3SXY7 679 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 NFXL1Q6ZNB6 911 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 FCHSD1Q86WN1 690 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 CCDC82Q8N4S0 544 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 OR6J1Q8NGC5 347 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 CTCFLQ8NI51 663 aaPredicted RBP12.34□□□□□ -0.43
CD44-227ENST00000528086 AFG1LQ8WV93 481 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 AP5M1Q9H0R1 490 aa12.34□□□□□ -0.43
CD44-227ENST00000528086 SLC12A7Q9Y666 1083 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms