RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 PARP1P09874 1014 aaKnown RBP11.78□□□□□ -0.52
VPS28-204ENST00000526054 SNHG28P0DPA3 235 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 PTGS1P23219 599 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 CYP2C18P33260 490 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 ALDH5A1P51649 535 aaPredicted RBP11.78□□□□□ -0.52
VPS28-204ENST00000526054 FGD1P98174 961 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 ZNF543Q08ER8 600 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 ITGA7Q13683 1181 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 ASPRV1Q53RT3 343 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 TMEM240Q5SV17 173 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 IQSEC1Q6DN90 963 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 TAPT1Q6NXT6 567 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 BTNL9Q6UXG8 535 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 NFXL1Q6ZNB6 911 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 CATIPQ7Z7H3 387 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 IGDCC4Q8TDY8 1250 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 TIFAQ96CG3 184 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 PURBQ96QR8 312 aaKnown RBP11.78□□□□□ -0.52
VPS28-204ENST00000526054 HIPK3Q9H422 1215 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 LY9Q9HBG7 655 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 GPCPD1Q9NPB8 672 aa11.78□□□□□ -0.52
VPS28-204ENST00000526054 DDAH1O94760 285 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 ACRP10323 421 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 CASTP20810 708 aaKnown RBP11.77□□□□□ -0.53
VPS28-204ENST00000526054 LIFRP42702 1097 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 ANAPC15P60006 121 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 BAATQ14032 418 aaPredicted RBP11.77□□□□□ -0.53
VPS28-204ENST00000526054 GRIN2CQ14957 1233 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 SLC30A10Q6XR72 485 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 ZNF365Q70YC5 407 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 C16orf59Q7L2K0 433 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 SLC43A3Q8NBI5 491 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 MORC4Q8TE76 937 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 SEZ6LQ9BYH1 1024 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 LRRC2Q9BYS8 371 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 MTIF3Q9H2K0 278 aaKnown RBP11.77□□□□□ -0.53
VPS28-204ENST00000526054 ZNF576Q9H609 170 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 IL23AQ9NPF7 189 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 Q9Y3F1 56 aa11.77□□□□□ -0.53
VPS28-204ENST00000526054 TANC1Q9C0D5 1861 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 LOC102724159A0A0B4J2E5 919 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 B4GALT4O60513 344 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 RPS6KB1P23443 525 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 CALML3P27482 149 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 PSMC6P62333 389 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 EXOSC10Q01780 885 aaKnown RBP11.76□□□□□ -0.53
VPS28-204ENST00000526054 GRM4Q14833 912 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 PWP2Q15269 919 aaKnown RBP11.76□□□□□ -0.53
VPS28-204ENST00000526054 DUSP28Q4G0W2 176 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 TMEM63BQ5T3F8 832 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 RASIP1Q5U651 963 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 SYNE3Q6ZMZ3 975 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 ZNF654Q8IZM8 581 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 TCEANC2Q96MN5 208 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 MPHOSPH6Q99547 160 aaKnown RBP11.76□□□□□ -0.53
VPS28-204ENST00000526054 PBX4Q9BYU1 374 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 TM6SF1Q9BZW5 370 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 UPF2Q9HAU5 1272 aaKnown RBP11.76□□□□□ -0.53
VPS28-204ENST00000526054 SENP2Q9HC62 589 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 PNMA2Q9UL42 364 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 SLC12A7Q9Y666 1083 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 GRIN2DO15399 1336 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 UMODL1Q5DID0 1318 aa11.76□□□□□ -0.53
VPS28-204ENST00000526054 GRXCR1A8MXD5 290 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 SEC24BO95487 1268 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 GOLGA8HP0CJ92 632 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CALM1P0DP23 149 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CALM2P0DP24 149 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CALM3P0DP25 149 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 KIF5BP33176 963 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 PBX2P40425 430 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CPT1AP50416 773 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 TROAPQ12815 778 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 COL9A3Q14050 684 aaPredicted RBP11.75□□□□□ -0.53
VPS28-204ENST00000526054 RNF207Q6ZRF8 634 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 SGMS1Q86VZ5 419 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CTCFLQ8NI51 663 aaPredicted RBP11.75□□□□□ -0.53
VPS28-204ENST00000526054 MAP3K14Q99558 947 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 NOC4LQ9BVI4 516 aaKnown RBP11.75□□□□□ -0.53
VPS28-204ENST00000526054 WDR11Q9BZH6 1224 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 TRPV6Q9H1D0 765 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 GPHNQ9NQX3 736 aaPredicted RBP11.75□□□□□ -0.53
VPS28-204ENST00000526054 POLR3EQ9NVU0 708 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 CYP46A1Q9Y6A2 500 aa11.75□□□□□ -0.53
VPS28-204ENST00000526054 SCN10AQ9Y5Y9 1956 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 DHX16O60231 1041 aaKnown RBP11.74□□□□□ -0.53
VPS28-204ENST00000526054 FGBP02675 491 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 CPA1P15085 419 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 CCL23P55773 120 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 RPS6P62753 249 aaKnown RBP11.74□□□□□ -0.53
VPS28-204ENST00000526054 PDE4DQ08499 809 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 PPP2R5BQ15173 497 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 RAB30Q15771 203 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 Q6ZUG5 572 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 RUFY3Q7L099 469 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 OR6J1Q8NGC5 347 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 CLEC4DQ8WXI8 215 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 HERVK_113Q902F9 699 aa11.74□□□□□ -0.53
VPS28-204ENST00000526054 GAS2L1Q99501 681 aaPredicted RBP11.74□□□□□ -0.53
VPS28-204ENST00000526054 WNT8AQ9H1J5 351 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms