RNA–Protein interactions for RNA: ENST00000525241.1

CD44-215, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 440 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-215ENST00000525241 FUCA1P04066 466 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 GLI4P10075 376 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 GTF2A2P52657 109 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 GABREP78334 506 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 LSAMPQ13449 338 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 BICRALQ6AI39 1079 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 MPZL3Q6UWV2 235 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 PRR23BQ6ZRT6 265 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 TEX2Q8IWB9 1127 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 PTPRN2Q92932 1015 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 ZFYVE21Q9BQ24 234 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 CDIP1Q9H305 208 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 BTG4Q9NY30 223 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 FAM53CQ9NYF3 392 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 MARCH2Q9P0N8 246 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 TRAF6Q9Y4K3 522 aa6.51□□□□□ -1.37
CD44-215ENST00000525241 A0A1W2PQJ5 194 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 TLDC2A0PJX2 215 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 OR14I1A6ND48 311 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 SRGAP3O43295 1099 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 DBHP09172 617 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 FPR2P25090 351 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 PDE6BP35913 854 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 GPR85P60893 370 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 RBM10P98175 930 aaKnown RBP6.5□□□□□ -1.37
CD44-215ENST00000525241 LBX2Q6XYB7 198 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 CEP68Q76N32 757 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 MAMDC2Q7Z304 686 aaPredicted RBP6.5□□□□□ -1.37
CD44-215ENST00000525241 IFNL3Q8IZI9 196 aa6.5□□□□□ -1.37
CD44-215ENST00000525241 ZNF552Q9H707 407 aaPredicted RBP6.5□□□□□ -1.37
CD44-215ENST00000525241 LRRC10BA6NIK2 292 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 C22orf46C9J442 243 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 CYBBP04839 570 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 MPOP05164 745 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 YBX1P67809 324 aaKnown RBP6.49□□□□□ -1.37
CD44-215ENST00000525241 CBX2Q14781 532 aaPredicted RBP6.49□□□□□ -1.37
CD44-215ENST00000525241 MLANAQ16655 118 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 TRIM61Q5EBN2 209 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 NLGN1Q8N2Q7 840 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 GSTCDQ8NEC7 633 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.49□□□□□ -1.37
CD44-215ENST00000525241 SLC7A14Q8TBB6 771 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 USP33Q8TEY7 942 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 TMEM169Q96HH4 297 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 DIRC2Q96SL1 478 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 NSUN3Q9H649 340 aaKnown RBP6.49□□□□□ -1.37
CD44-215ENST00000525241 KCNK12Q9HB15 430 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 NCOA5Q9HCD5 579 aaKnown RBP6.49□□□□□ -1.37
CD44-215ENST00000525241 FANCLQ9NW38 375 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 KLHL14Q9P2G3 628 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 PPARGC1AQ9UBK2 798 aaKnown RBP6.49□□□□□ -1.37
CD44-215ENST00000525241 X6R8D5 127 aa6.49□□□□□ -1.37
CD44-215ENST00000525241 NUDT19A8MXV4 375 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 H7BY64 318 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 AQP7O14520 342 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 PPP1R12AO14974 1030 aaPredicted RBP6.48□□□□□ -1.37
CD44-215ENST00000525241 KCNQ2O43526 872 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 NTRK1P04629 796 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 RAB3GAP1Q15042 981 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 WWC2Q6AWC2 1192 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 PAQR3Q6TCH7 311 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 RPTNQ6XPR3 784 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 HOMER1Q86YM7 354 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 RIOX2Q8IUF8 465 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 TRMT2BQ96GJ1 504 aaKnown RBP6.48□□□□□ -1.37
CD44-215ENST00000525241 CHAMP1Q96JM3 812 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 MRPL4Q9BYD3 311 aaKnown RBP6.48□□□□□ -1.37
CD44-215ENST00000525241 SLC52A2Q9HAB3 445 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 CLDND1Q9NY35 253 aa6.48□□□□□ -1.37
CD44-215ENST00000525241 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.47□□□□□ -1.37
CD44-215ENST00000525241 HRKO00198 91 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 PLD2O14939 933 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 ASMTLO95671 621 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 NR1I3Q14994 352 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 ZNF605Q86T29 641 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 CABP7Q86V35 215 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 NETO2Q8NC67 525 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 APPBP2Q92624 585 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 CLUHP3Q96NS8 147 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 EPB41L4BQ9H329 900 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 RXFP1Q9HBX9 757 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 DCP1AQ9NPI6 582 aaPredicted RBP6.47□□□□□ -1.37
CD44-215ENST00000525241 NDOR1Q9UHB4 597 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 RNF114Q9Y508 228 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 HCFC2Q9Y5Z7 792 aa6.47□□□□□ -1.37
CD44-215ENST00000525241 MYOCOSA0A1B0GUC4 107 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 ZC3H12DA2A288 527 aaKnown RBP6.46□□□□□ -1.38
CD44-215ENST00000525241 F8W031 263 aaPredicted RBP6.46□□□□□ -1.38
CD44-215ENST00000525241 ENPP3O14638 875 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 EFCAB14O75071 495 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 RAPGEF3O95398 923 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 CRTAMO95727 393 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 MAPKAPK2P49137 400 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 KIZQ2M2Z5 673 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 FNDC3BQ53EP0 1204 aaKnown RBP6.46□□□□□ -1.38
CD44-215ENST00000525241 MROH9Q5TGP6 573 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 C16orf86Q6ZW13 317 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 SCLYQ96I15 445 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 JAM3Q9BX67 310 aa6.46□□□□□ -1.38
CD44-215ENST00000525241 TRIM39Q9HCM9 518 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms