RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 LBHD1Q9BQE6 289 aaPredicted RBP24.22■■□□□ 1.47
VPS28-203ENST00000524521 SPZ1Q9BXG8 430 aa24.22■■□□□ 1.47
VPS28-203ENST00000524521 TRIOBPQ9H2D6 2365 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 ELP1O95163 1332 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 PQBP1O60828 265 aaKnown RBP24.21■■□□□ 1.47
VPS28-203ENST00000524521 SMARCA1P28370 1054 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 HSD17B4P51659 736 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 CMTR1Q8N1G2 835 aaKnown RBP24.21■■□□□ 1.47
VPS28-203ENST00000524521 SCFD2Q8WU76 684 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 IWS1Q96ST2 819 aa24.21■■□□□ 1.47
VPS28-203ENST00000524521 UBE2OQ9C0C9 1292 aaKnown RBP24.21■■□□□ 1.47
VPS28-203ENST00000524521 MAP3K20Q9NYL2 800 aaKnown RBP24.21■■□□□ 1.47
VPS28-203ENST00000524521 ZEB2O60315 1214 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 REC8O95072 547 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 PLEKHA8P1O95397 391 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 EIF2AK2P19525 551 aaKnown RBP24.2■■□□□ 1.46
VPS28-203ENST00000524521 HOXA13P31271 388 aaPredicted RBP24.2■■□□□ 1.46
VPS28-203ENST00000524521 STXBP2Q15833 593 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 SGMS1Q86VZ5 419 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 SRBD1Q8N5C6 995 aaKnown RBP24.2■■□□□ 1.46
VPS28-203ENST00000524521 SAMD3Q8N6K7 520 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 FANCBQ8NB91 859 aa24.2■■□□□ 1.46
VPS28-203ENST00000524521 A0A1W2PPC1 479 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 GCOM1H8Y6P7 765 aaPredicted RBP24.19■■□□□ 1.46
VPS28-203ENST00000524521 POLR2MP0CAP2 368 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 TXNP10599 105 aaKnown RBP24.19■■□□□ 1.46
VPS28-203ENST00000524521 HSPA4P34932 840 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 FXR1P51114 621 aaKnown RBP eCLIP24.19■■□□□ 1.46
VPS28-203ENST00000524521 GHRHRQ02643 423 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 PPP2R5BQ15173 497 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 CXCL17Q6UXB2 119 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 SH3RF1Q7Z6J0 888 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 MICU3Q86XE3 530 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 PDLIM7Q9NR12 457 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 PXMP2Q9NR77 195 aa24.19■■□□□ 1.46
VPS28-203ENST00000524521 SEC63Q9UGP8 760 aaKnown RBP24.19■■□□□ 1.46
VPS28-203ENST00000524521 A0A0U1RQG5 324 aaPredicted RBP24.18■■□□□ 1.46
VPS28-203ENST00000524521 DCDC2CA8MYV0 355 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 NR3C2P08235 984 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 HMGB1P09429 215 aaKnown RBP24.18■■□□□ 1.46
VPS28-203ENST00000524521 TTLL4Q14679 1199 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 SEPT14Q6ZU15 432 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 CCDC82Q8N4S0 544 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 OR6J1Q8NGC5 347 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 KCNB2Q92953 911 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 SNX14Q9Y5W7 946 aa24.18■■□□□ 1.46
VPS28-203ENST00000524521 TRIM43BA6NCK2 446 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 NKRFO15226 690 aaKnown RBP eCLIP24.17■■□□□ 1.46
VPS28-203ENST00000524521 CABYRO75952 493 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 CLTBP09497 229 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 FGD1P98174 961 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 APOA5Q6Q788 366 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 ANKRD33Q7Z3H0 272 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 FCHSD1Q86WN1 690 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 COPS5Q92905 334 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 TRIM43Q96BQ3 446 aaPredicted RBP24.17■■□□□ 1.46
VPS28-203ENST00000524521 JAKMIP1Q96N16 626 aaKnown RBP24.17■■□□□ 1.46
VPS28-203ENST00000524521 TOX2Q96NM4 488 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 BRPF3Q9ULD4 1205 aa24.17■■□□□ 1.46
VPS28-203ENST00000524521 ARVCFO00192 962 aa24.16■■□□□ 1.46
VPS28-203ENST00000524521 MYCLP12524 364 aaPredicted RBP24.16■■□□□ 1.46
VPS28-203ENST00000524521 CPA1P15085 419 aa24.16■■□□□ 1.46
VPS28-203ENST00000524521 CDK7P50613 346 aa24.16■■□□□ 1.46
VPS28-203ENST00000524521 TMEM39AQ9NV64 488 aa24.16■■□□□ 1.46
VPS28-203ENST00000524521 EIF3JO75822 258 aaKnown RBP24.15■■□□□ 1.46
VPS28-203ENST00000524521 ARIH2O95376 493 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 SLC34A2O95436 690 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 CPT1AP50416 773 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 FAAP100Q0VG06 881 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 TMTC3Q6ZXV5 915 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 BADQ92934 168 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 PDCD2LQ9BRP1 358 aa24.15■■□□□ 1.46
VPS28-203ENST00000524521 MROH7Q68CQ1 1323 aa24.14■■□□□ 1.46
VPS28-203ENST00000524521 hCG_1642624A0A1W2PR95 340 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 ZBTB43O43298 467 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 MYL3P08590 195 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 LY6KQ17RY6 165 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 BRDTQ58F21 947 aaPredicted RBP24.14■■□□□ 1.45
VPS28-203ENST00000524521 CCDC62Q6P9F0 684 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 BLOC1S2Q6QNY1 142 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 POLR3EQ9NVU0 708 aa24.14■■□□□ 1.45
VPS28-203ENST00000524521 NAP1L2Q9ULW6 460 aaPredicted RBP24.14■■□□□ 1.45
VPS28-203ENST00000524521 KLF18A0A0U1RQI7 1052 aa24.13■■□□□ 1.45
VPS28-203ENST00000524521 RAG1P15918 1043 aa24.13■■□□□ 1.45
VPS28-203ENST00000524521 ITGA7Q13683 1181 aa24.13■■□□□ 1.45
VPS28-203ENST00000524521 PGM5Q15124 567 aa24.13■■□□□ 1.45
VPS28-203ENST00000524521 TDHQ8IZJ6 230 aa24.13■■□□□ 1.45
VPS28-203ENST00000524521 RBM28Q9NW13 759 aaKnown RBP24.13■■□□□ 1.45
VPS28-203ENST00000524521 DNAH12Q6ZR08 3092 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 KIAA0355O15063 1070 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 TLR3O15455 904 aaKnown RBP24.12■■□□□ 1.45
VPS28-203ENST00000524521 PSMC6P62333 389 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 RTN1Q16799 776 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 Q6ZUG5 572 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 VSIG10LQ86VR7 867 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 CUL5Q93034 780 aa24.12■■□□□ 1.45
VPS28-203ENST00000524521 GOLGA8AA7E2F4 631 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 GOLGA8BA8MQT2 603 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 GH1P01241 217 aa24.11■■□□□ 1.45
VPS28-203ENST00000524521 ITGB8P26012 769 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms