RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 WDR24Q96S15 920 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 NHEJ1Q9H9Q4 299 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 EPB41L4AQ9HCS5 686 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 PHLPP2Q6ZVD8 1323 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 KDM3AQ9Y4C1 1321 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 ACTN4O43707 911 aaKnown RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 TCP1P17987 556 aaKnown RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 TXNRD1Q16881 649 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 E4F1Q66K89 784 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 MIGA2Q7L4E1 593 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CEP95Q96GE4 821 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 OSBPL5Q9H0X9 879 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 NCOA3Q9Y6Q9 1424 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CDHR2Q9BYE9 1310 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 RAD17O75943 681 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CD19P15391 556 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 PPFIA1Q13136 1202 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 FAM102BQ5T8I3 360 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 BCAS4Q8TDM0 211 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CHURC1Q8WUH1 139 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 IQCGQ9H095 443 aaKnown RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 GNGT1P63211 74 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 ZBTB16Q05516 673 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 PFKFB3Q16875 520 aaPredicted RBP12.86□□□□□ -0.35
SYNPO-204ENST00000519664 CLEC4GQ6UXB4 293 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 ZNF365Q70YC5 407 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 ANKS4BQ8N8V4 417 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 FBF1Q8TES7 1133 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 NDST4Q9H3R1 872 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 FAM204AQ9H8W3 233 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 AMFRQ9UKV5 643 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 RABGAP1Q9Y3P9 1069 aa12.86□□□□□ -0.35
SYNPO-204ENST00000519664 E7EVH7 732 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 K7ENM7 598 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 BCRP11274 1271 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 CTNNA1P35221 906 aaKnown RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 XKR9Q5GH70 373 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 GPATCH4Q5T3I0 446 aaKnown RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 TAB3Q8N5C8 712 aaPredicted RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 MGARPQ8TDB4 240 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 PCIF1Q9H4Z3 704 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ABCB6Q9NP58 842 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 PICK1Q9NRD5 415 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 GOLGA5Q8TBA6 731 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 LRRC45Q96CN5 670 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 IFT74Q96LB3 600 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 COL4A3BPQ9Y5P4 624 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ABCC12Q96J65 1359 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 PPEF1O14829 653 aaPredicted RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 HNRNPH2P55795 449 aaKnown RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 GRAPQ13588 217 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ALX1Q15699 326 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 MAN2A1Q16706 1144 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ASPRV1Q53RT3 343 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 UBL4BQ8N7F7 174 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 GRAPLQ8TC17 118 aaPredicted RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ARHGEF1Q92888 912 aaKnown RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 CABS1Q96KC9 395 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 AK8Q96MA6 479 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 HPS5Q9UPZ3 1129 aa12.85□□□□□ -0.35
SYNPO-204ENST00000519664 CLTCQ00610 1675 aaKnown RBP12.85□□□□□ -0.35
SYNPO-204ENST00000519664 ATP2A1O14983 1001 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 POLR2MP0CAP2 368 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 LRCH2Q5VUJ6 765 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 MB21D1Q8N884 522 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 NUCKS1Q9H1E3 243 aaKnown RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 EMILIN3Q9NT22 766 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 HDAC6Q9UBN7 1215 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CEP83Q9Y592 693 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 ZC3H13Q5T200 1668 aaKnown RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 TTC26A0AVF1 554 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 BUB1BO60566 1050 aaPredicted RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 BBOX1O75936 387 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 PRPF6O94906 941 aaKnown RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 IFNB1P01574 187 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 ZBED6P86452 979 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CAPN12Q6ZSI9 719 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 KIFAP3Q92845 792 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 RPGRIP1Q96KN7 1286 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 NAP1L3Q99457 506 aaPredicted RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 BHMT2Q9H2M3 363 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 QTRT2Q9H974 415 aaKnown RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 EPB41L5Q9HCM4 733 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CD209Q9NNX6 404 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 LARSQ9P2J5 1176 aaKnown RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 A0A1B0GUA9 196 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CSF1RP07333 972 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 INPP5BP32019 993 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 PDE6BP35913 854 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 ST3GAL1Q11201 340 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 DDX12PQ92771 950 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 PANX2Q96RD6 677 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 FBXO2Q9UK22 296 aaPredicted RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 MROH7-TTC4A0A0A0MT08 1334 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 RPS6KA4O75676 772 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 GNA14O95837 355 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CCZ1BP86790 482 aa12.84□□□□□ -0.35
SYNPO-204ENST00000519664 CCZ1P86791 482 aaPredicted RBP12.84□□□□□ -0.35
SYNPO-204ENST00000519664 NLRX1Q86UT6 975 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms