RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 ZDHHC14Q8IZN3 488 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 THEMISQ8N1K5 641 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 GIMAP8Q8ND71 665 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 NLGN2Q8NFZ4 835 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PHOSPHO1Q8TCT1 267 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RASGRP4Q8TDF6 673 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PNISRQ8TF01 805 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CPLX3Q8WVH0 158 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LINC01599Q8WXQ3 324 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CPA5Q8WXQ8 436 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEC14L1Q92503 715 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 APPBP2Q92624 585 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PMM1Q92871 262 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 E2F7Q96AV8 911 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DACT3Q96B18 629 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 WDR89Q96FK6 387 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TSPAN17Q96FV3 270 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TCTN2Q96GX1 697 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SEC16BQ96JE7 1060 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SCYL1Q96KG9 808 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 C8orf48Q96LL4 319 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM161BQ96MY7 647 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMEM74Q96NL1 305 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SORCS2Q96PQ0 1159 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM193BQ96PV7 902 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPS6KC1Q96S38 1066 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SRPK1Q96SB4 655 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 CEP89Q96ST8 783 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 APBA2Q99767 749 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DUSP9Q99956 384 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 BUD13Q9BRD0 619 aaKnown RBP eCLIP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MRIQ9BWK5 157 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAF1Q9H063 256 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DUSP15Q9H1R2 295 aaPredicted RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PHAXQ9H814 394 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRDM7Q9NQW5 492 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PARPBPQ9NWS1 579 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDX56Q9NY93 547 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TERF2IPQ9NYB0 399 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 SIRPGQ9P1W8 387 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 WHRNQ9P202 907 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLHL42Q9P2K6 505 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LRP2BPQ9P2M1 347 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 REV1Q9UBZ9 1251 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TJP2Q9UDY2 1190 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TCEAL9Q9UHQ7 104 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXO10Q9UK96 956 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACSL6Q9UKU0 697 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 WWC3Q9ULE0 1092 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 STRIP2Q9ULQ0 834 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TSC22D4Q9Y3Q8 395 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 TESMINQ9Y4I5 508 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 LAS1LQ9Y4W2 734 aaKnown RBP0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDHGC5Q9Y5F6 944 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 PCDHA11Q9Y5I1 949 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 COMMD10Q9Y6G5 202 aa0.76□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP31Q70CQ4 1352 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRR36Q9H6K5 1346 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SH3D21A4FU49 640 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 IQCA1LA6NCM1 817 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 OTOL1A6NHN0 477 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GFRA2O00451 464 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 IRS4O14654 1257 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 TM4SF5O14894 197 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 GPR182O15218 404 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KLF4O43474 513 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PLIN1O60240 522 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 FKTNO75072 461 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAND2O75155 1236 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDC45O75419 566 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 USP2O75604 605 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 WDHD1O75717 1129 aaPredicted RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF205O95201 554 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATE1O95260 518 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HTR3BO95264 441 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ECEL1O95672 775 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PEX11BO96011 259 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ESR1P03372 595 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 ITGB3P05106 788 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SSBP05455 408 aaKnown RBP eCLIP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRT18P05783 430 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 HLA-DOAP06340 250 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 VIL1P09327 827 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CTSHP09668 335 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 C6P13671 934 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 VAV1P15498 845 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PTMSP20962 102 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 PAX3P23760 479 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPL13P26373 211 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD38P28907 300 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MAN1A1P33908 653 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNR2P34972 360 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 EIF4A3P38919 411 aaKnown RBP0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 CD96P40200 585 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 AVPR1BP47901 424 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MASP1P48740 699 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 SELENOPP49908 381 aa0.75□□□□□ -2.29
RNU4-54P-201ENST00000516428 MEOX1P50221 254 aa0.75□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms