RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 CICQ96RK0 1608 aaPredicted RBP7.23□□□□□ -1.25
NUP54-218ENST00000515460 ANKRD30BQ9BXX2 1392 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 CHMP4BP1P59074 171 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 TIGD5Q53EQ6 642 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 SLFN12Q8IYM2 578 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 OXR1Q8N573 874 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 PDZD8Q8NEN9 1154 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 RNF141Q8WVD5 230 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 KREMEN1Q96MU8 473 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 KRTAP4-9Q9BYQ8 210 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 SP110Q9HB58 689 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 RAPGEFL1Q9UHV5 662 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 GGT7Q9UJ14 662 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 ABCA3Q99758 1704 aa7.23□□□□□ -1.25
NUP54-218ENST00000515460 KCPQ6ZWJ8 1503 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 CCDC144AA2RUR9 1427 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 YTHDC2Q9H6S0 1430 aaKnown RBP7.22□□□□□ -1.25
NUP54-218ENST00000515460 HTR3BO95264 441 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 EIF4A3P38919 411 aaKnown RBP7.22□□□□□ -1.25
NUP54-218ENST00000515460 RBM10P98175 930 aaKnown RBP7.22□□□□□ -1.25
NUP54-218ENST00000515460 SIAH1Q8IUQ4 282 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 PHACTR4Q8IZ21 702 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 DHX38Q92620 1227 aaKnown RBP7.22□□□□□ -1.25
NUP54-218ENST00000515460 PRAM1Q96QH2 718 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 CD320Q9NPF0 282 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 SMG5Q9UPR3 1016 aaKnown RBP7.22□□□□□ -1.25
NUP54-218ENST00000515460 TOPAZ1Q8N9V7 1692 aa7.22□□□□□ -1.25
NUP54-218ENST00000515460 PIK3C2GO75747 1445 aa7.21□□□□□ -1.25
NUP54-218ENST00000515460 SHISA3A0PJX4 238 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 SAFB2Q14151 953 aaKnown RBP eCLIP7.21□□□□□ -1.26
NUP54-218ENST00000515460 CLEC16AQ2KHT3 1053 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 CIAPIN1Q6FI81 312 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 ZNF605Q86T29 641 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 CCDC74BQ96LY2 380 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 KIF2CQ99661 725 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 LRRC3Q9BY71 257 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 KCNQ5Q9NR82 932 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 POLR3KQ9Y2Y1 108 aaPredicted RBP7.21□□□□□ -1.26
NUP54-218ENST00000515460 SBF2Q86WG5 1849 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 MEGF6O75095 1541 aa7.21□□□□□ -1.26
NUP54-218ENST00000515460 CDC42BPGQ6DT37 1551 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 PHRF1Q9P1Y6 1649 aaKnown RBP7.2□□□□□ -1.26
NUP54-218ENST00000515460 UNC80Q8N2C7 3258 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 FITM1A5D6W6 292 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 TLR3O15455 904 aaKnown RBP7.2□□□□□ -1.26
NUP54-218ENST00000515460 ZNF16P17020 682 aaPredicted RBP7.2□□□□□ -1.26
NUP54-218ENST00000515460 GARTP22102 1010 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 GBP1P32455 592 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 GALK1P51570 392 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 FBXL19Q6PCT2 694 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 TMEM87AQ8NBN3 555 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 FBXO27Q8NI29 283 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 COPRSQ9NQ92 184 aa7.2□□□□□ -1.26
NUP54-218ENST00000515460 VCANP13611 3396 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 COL24A1Q17RW2 1714 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 NUAK1O60285 661 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 DNAJA2O60884 412 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 MED14OSP0DP75 135 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 HSP90B1P14625 803 aaKnown RBP7.19□□□□□ -1.26
NUP54-218ENST00000515460 GLDCP23378 1020 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 PDE6BP35913 854 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 LILRA6Q6PI73 481 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 LILRA2Q8N149 483 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 CHMP4AQ9BY43 222 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 SLC6A17Q9H1V8 727 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 EBF1Q9UH73 591 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 GPR160Q9UJ42 338 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 KIF1BO60333 1816 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 IGSF1Q8N6C5 1336 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 SBNO1A3KN83 1393 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 CNTNAP1P78357 1384 aa7.19□□□□□ -1.26
NUP54-218ENST00000515460 MFAP1P55081 439 aaKnown RBP7.18□□□□□ -1.26
NUP54-218ENST00000515460 LINC00310P59036 64 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 TEKQ02763 1124 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 SPPL2CQ8IUH8 684 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 ZNF296Q8WUU4 475 aaPredicted RBP7.18□□□□□ -1.26
NUP54-218ENST00000515460 SNX27Q96L92 541 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 HIRIP3Q9BW71 556 aaPredicted RBP7.18□□□□□ -1.26
NUP54-218ENST00000515460 ASPNQ9BXN1 380 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 IRF2BPLQ9H1B7 796 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 ASCC2Q9H1I8 757 aaPredicted RBP7.18□□□□□ -1.26
NUP54-218ENST00000515460 POGKQ9P215 609 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 BCCIPQ9P287 314 aaKnown RBP eCLIP7.18□□□□□ -1.26
NUP54-218ENST00000515460 PNPLA7Q6ZV29 1317 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 TNS3Q68CZ2 1445 aa7.18□□□□□ -1.26
NUP54-218ENST00000515460 NRXN1Q9ULB1 1477 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 A0A0U1RQG5 324 aaPredicted RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 RBM47A0AV96 593 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 KRTAP9-7A8MTY7 169 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 PSPNO60542 156 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 GREM1O60565 184 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 RPL10P27635 214 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 AMIGO3Q86WK7 504 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 SIRT2Q8IXJ6 389 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 INTS4Q96HW7 963 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 NAP1L5Q96NT1 182 aaPredicted RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 CWC22Q9HCG8 908 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 YBX2Q9Y2T7 364 aaKnown RBP7.17□□□□□ -1.26
NUP54-218ENST00000515460 PCDHB14Q9Y5E9 798 aa7.17□□□□□ -1.26
NUP54-218ENST00000515460 PEAK1Q9H792 1746 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms