RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 FOXO4P98177 505 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 KCNJ12Q14500 433 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 RNF10Q8N5U6 811 aaKnown RBP14.41□□□□□ -0.1
TCOF1-213ENST00000514442 SMCR8Q8TEV9 937 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-213ENST00000514442 COA7Q96BR5 231 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 EXOC7Q9UPT5 735 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 ZBTB12Q9Y330 459 aaPredicted RBP14.41□□□□□ -0.1
TCOF1-213ENST00000514442 OVOS2A0A0J9YW53 1432 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 TTLL1O95922 423 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 SPATA1Q5VX52 437 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 OVOS2Q6IE36 1432 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 ACRBPQ8NEB7 543 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 ARHGEF1Q92888 912 aaKnown RBP14.41□□□□□ -0.1
TCOF1-213ENST00000514442 CYP2J2P51589 502 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 ARMC9Q7Z3E5 817 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 PARP9Q8IXQ6 854 aa14.41□□□□□ -0.1
TCOF1-213ENST00000514442 CDC25AP30304 524 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 CTNNA1P35221 906 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 PDCLQ13371 301 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 MIPOL1Q8TD10 442 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 SH3RF3Q8TEJ3 882 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 HNRNPLLQ8WVV9 542 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 FOXP1Q9H334 677 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 AS3MTQ9HBK9 375 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 PCDHA4Q9UN74 947 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 STK38LQ9Y2H1 464 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 MRPL11Q9Y3B7 192 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 KDM3AQ9Y4C1 1321 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 VIRMAQ69YN4 1812 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 HIP1RO75146 1068 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 VSNL1P62760 191 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 TOB2Q14106 344 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 RRAGAQ7L523 313 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 CCPG1Q9ULG6 757 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 PCDHA5Q9Y5H7 936 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 STK24Q9Y6E0 443 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 NEDD4P46934 1319 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 TYW1BQ6NUM6 668 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 GADL1Q6ZQY3 521 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 HINFPQ9BQA5 517 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 DLC1Q96QB1 1528 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 PPP1R12AO14974 1030 aaPredicted RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 RPN1P04843 607 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 TCP1P17987 556 aaKnown RBP14.4□□□□□ -0.1
TCOF1-213ENST00000514442 GPR162Q16538 588 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 VWA3BQ502W6 1294 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 TMC4Q7Z404 712 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 CCDC25Q86WR0 208 aa14.4□□□□□ -0.1
TCOF1-213ENST00000514442 A0A1W2PRG0 241 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 DKC1O60832 514 aaKnown RBP eCLIP14.39□□□□□ -0.11
TCOF1-213ENST00000514442 PLEKHA8P1O95397 391 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 MMP1P03956 469 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 SLMAPQ14BN4 828 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 ARHGAP44Q17R89 818 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 KRT71Q3SY84 523 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 SLC9C1Q4G0N8 1177 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 GRIPAP1Q4V328 841 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 FAM102BQ5T8I3 360 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 SMYD4Q8IYR2 804 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-213ENST00000514442 MYOCDQ8IZQ8 938 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CCHCR1Q8TD31 782 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.39□□□□□ -0.11
TCOF1-213ENST00000514442 IKBKGQ9Y6K9 419 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 SPOPO43791 374 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 NBPF9Q3BBW0 867 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 GALNT17Q6IS24 598 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 MIGA2Q7L4E1 593 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 FERMT1Q9BQL6 677 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 PLCB1Q9NQ66 1216 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 GTPBP6O43824 516 aaPredicted RBP14.39□□□□□ -0.11
TCOF1-213ENST00000514442 NR1D1P20393 614 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 C2orf54Q08AI8 447 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 TRPC3Q13507 836 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 SCARF1Q14162 830 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 DCAF15Q66K64 600 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC170Q8IYT3 715 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC197Q8NCU1 140 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 TCP11Q8WWU5 503 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 GLG1Q92896 1179 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 PANK4Q9NVE7 773 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 STIM2Q9P246 746 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CPDO75976 1380 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 NPR1P16066 1061 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 MAGEA1P43355 309 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 KLHL30Q0D2K2 578 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CCDC17Q96LX7 622 aa14.39□□□□□ -0.11
TCOF1-213ENST00000514442 CDHR2Q9BYE9 1310 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 MEFVO15553 781 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 IFNAR1P17181 557 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 ASPRV1Q53RT3 343 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 KLHL7Q8IXQ5 586 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 AMNQ9BXJ7 453 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 KCNK9Q9NPC2 374 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 ZC3H13Q5T200 1668 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 CC2D2BQ6DHV5 1058 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 CROCCP2Q86T23 111 aa14.38□□□□□ -0.11
TCOF1-213ENST00000514442 RAB3IPQ96QF0 476 aaPredicted RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 LSM14BQ9BX40 385 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 MTRF1LQ9UGC7 380 aaKnown RBP14.38□□□□□ -0.11
TCOF1-213ENST00000514442 DIP2AQ14689 1571 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms