RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 MTHFSDQ2M296 383 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 RRAGBQ5VZM2 374 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 HOOK3Q86VS8 718 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 TMTC2Q8N394 836 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 PHKBQ93100 1093 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 EEF2KMTQ96G04 330 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 DMAP1Q9NPF5 467 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 PNMA3Q9UL41 463 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CDC42BPGQ6DT37 1551 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 KCNJ18B7U540 433 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CHN1P15882 459 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CYP11B2P19099 503 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 BIRC3Q13489 604 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 KCNJ12Q14500 433 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 TSNAXIP1Q2TAA8 658 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 P3H1Q32P28 736 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 KBTBD12Q3ZCT8 623 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 NT5DC1Q5TFE4 455 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 PLCB1Q9NQ66 1216 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 BUB1O43683 1085 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 ETS2P15036 469 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 TRIM21P19474 475 aaKnown RBP13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 PEX5P50542 639 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 RASSF7Q02833 373 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 DPYDQ12882 1025 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 SGSM1Q2NKQ1 1148 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 CFAP221Q4G0U5 840 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 MREGQ8N565 214 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 DNAJC9Q8WXX5 260 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 IFT74Q96LB3 600 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 CCDC42Q96M95 316 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 MTFR1LQ9H019 292 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 VCX3BQ9H321 246 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 VCX3AQ9NNX9 186 aa13.21□□□□□ -0.29
LIMCH1-213ENST00000511496 ABCA9Q8IUA7 1624 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 FAM237AA0A1B0GTK4 181 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 HNRNPCP07910 306 aaKnown RBP eCLIP13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 TNFRSF8P28908 595 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 MCL1Q07820 350 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 ERMARDQ5T6L9 678 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 RANBP17Q9H2T7 1088 aaKnown RBP13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 SPATA7Q9P0W8 599 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 VPS54Q9P1Q0 977 aa13.21□□□□□ -0.3
LIMCH1-213ENST00000511496 GFPT2O94808 682 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 COPS2P61201 443 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 ITIH3Q06033 890 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 OR52E8Q6IFG1 317 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 TMEM110Q86TL2 294 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 FAM129AQ9BZQ8 928 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 CWC25Q9NXE8 425 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 SH3TC1Q8TE82 1336 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 ARHGEF10O15013 1369 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 MYH10P35580 1976 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 CRB1P82279 1406 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 CCNFP41002 786 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 CBX3Q13185 183 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 TRIM29Q14134 588 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 RCN2Q14257 317 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 ITIH4Q14624 930 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 UAP1Q16222 522 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 ZNF365Q70YC5 407 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 C1orf131Q8NDD1 294 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 UBAC1Q9BSL1 405 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 CCDC113Q9H0I3 377 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 LRRC4CQ9HCJ2 640 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 FBXL5Q9UKA1 691 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 INTUQ9ULD6 942 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 AFF2P51816 1311 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 HSPA9P38646 679 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 APBB1IPQ7Z5R6 666 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 APLFQ8IW19 511 aaPredicted RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 C17orf50Q8WW18 174 aa13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 PRMT1Q99873 361 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 IFIH1Q9BYX4 1025 aaKnown RBP13.2□□□□□ -0.3
LIMCH1-213ENST00000511496 PPP1R3GB7ZBB8 358 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 PLEKP08567 350 aaPredicted RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 PAEPP09466 180 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 CCNG1P51959 295 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 TCP11X2Q5H9J9 407 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 AGXT2Q9BYV1 514 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 RAB17Q9H0T7 212 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 CARD9Q9H257 536 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 BLZF1Q9H2G9 400 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 ABCA8O94911 1581 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 ABLIM1O14639 778 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 CA8P35219 290 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 IGHMBP2P38935 993 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 CACNA2D1P54289 1103 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 DHX9Q08211 1270 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 SAFBQ15424 915 aaKnown RBP eCLIP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 HLFQ16534 295 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 LRIG3Q6UXM1 1119 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 DDX50Q9BQ39 737 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 ESF1Q9H501 851 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 LIMA1Q9UHB6 759 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 MAP2P11137 1827 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 RAD51CO43502 376 aa13.19□□□□□ -0.3
LIMCH1-213ENST00000511496 KCNA3P22001 575 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms