RNA–Protein interactions for RNA: ENST00000508284.5

SQSTM1-212, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 578 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-212ENST00000508284 PPP1R12CQ9BZL4 782 aa20.89■□□□□ 0.93
SQSTM1-212ENST00000508284 GPHNQ9NQX3 736 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-212ENST00000508284 POLR3EQ9NVU0 708 aa20.89■□□□□ 0.93
SQSTM1-212ENST00000508284 MTMR10Q9NXD2 777 aa20.89■□□□□ 0.93
SQSTM1-212ENST00000508284 MAD2L2Q9UI95 211 aa20.89■□□□□ 0.93
SQSTM1-212ENST00000508284 NKRFO15226 690 aaKnown RBP eCLIP20.88■□□□□ 0.934e-8■□□□□ 9.4
SQSTM1-212ENST00000508284 TXNP10599 105 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 EPHB4P54760 987 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 PSMC6P62333 389 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 NECTIN1Q15223 517 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 CHST3Q7LGC8 479 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 TMEM199Q8N511 208 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 SYTL5Q8TDW5 730 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 NSUN6Q8TEA1 469 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 KCNB2Q92953 911 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 TAAR1Q96RJ0 339 aa20.88■□□□□ 0.93
SQSTM1-212ENST00000508284 ZBTB5O15062 677 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 CFBP00751 764 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 MYL3P08590 195 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 TTLL4Q14679 1199 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 TMEM67Q5HYA8 995 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 ZNF697Q5TEC3 545 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 ARHGEF16Q5VV41 709 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 HOMER1Q86YM7 354 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 SLC43A3Q8NBI5 491 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 RMDN3Q96TC7 470 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 TAF6LQ9Y6J9 622 aa20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 LAMA2P24043 3122 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-212ENST00000508284 PALM3A6NDB9 673 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 CD4P01730 458 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 PPIGQ13427 754 aaKnown RBP eCLIP20.86■□□□□ 0.939e-12■■□□□ 13.5
SQSTM1-212ENST00000508284 GRM4Q14833 912 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 STXBP2Q15833 593 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 CREB3L3Q68CJ9 461 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 FAM109BQ6ICB4 259 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 STOX1Q6ZVD7 989 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 CATIPQ7Z7H3 387 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 FAM161BQ96MY7 647 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 KIF2CQ99661 725 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 PCDHA1Q9Y5I3 950 aa20.86■□□□□ 0.93
SQSTM1-212ENST00000508284 GRIN2DO15399 1336 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 SMAD3P84022 425 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 TRAF1Q13077 416 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 RABEP1Q15276 862 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 SEPT14Q6ZU15 432 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 IL27Q8NEV9 243 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 COPS5Q92905 334 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 IWS1Q96ST2 819 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 HIPK3Q9H422 1215 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 SENP2Q9HC62 589 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 COL20A1Q9P218 1284 aa20.85■□□□□ 0.93
SQSTM1-212ENST00000508284 SLC27A2O14975 620 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 CSF2RAP15509 400 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 EIF2AK2P19525 551 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 PURAQ00577 322 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 MTMR8Q96EF0 704 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.84■□□□□ 0.931e-6■■■□□ 15.6
SQSTM1-212ENST00000508284 MTG1Q9BT17 334 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 TRPV6Q9H1D0 765 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 STXBP5LQ9Y2K9 1186 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 MYH6P13533 1939 aa20.84■□□□□ 0.93
SQSTM1-212ENST00000508284 B4GALT4O60513 344 aa20.83■□□□□ 0.93
SQSTM1-212ENST00000508284 CYP2C18P33260 490 aa20.83■□□□□ 0.93
SQSTM1-212ENST00000508284 TSGA10IPQ3SY00 556 aa20.83■□□□□ 0.93
SQSTM1-212ENST00000508284 PIGSQ96S52 555 aa20.83■□□□□ 0.93
SQSTM1-212ENST00000508284 SNX14Q9Y5W7 946 aa20.83■□□□□ 0.93
SQSTM1-212ENST00000508284 A6NJR5 290 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 KPNA6O60684 536 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 PPP1R11O60927 126 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 ARIH2O95376 493 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 ANTXR2P58335 489 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 TROAPQ12815 778 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 KRT32Q14532 448 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 FAM47CQ5HY64 1035 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 MB21D2Q8IYB1 491 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 SLC17A8Q8NDX2 589 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 IGDCC4Q8TDY8 1250 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 ALDH8A1Q9H2A2 487 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 RIOX1Q9H6W3 641 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 PXMP2Q9NR77 195 aa20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 MAP3K20Q9NYL2 800 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-212ENST00000508284 PNMA6FA0A0J9YX94 578 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 EIF3JO75822 258 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 GH1P01241 217 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 NR3C2P08235 984 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 SUPT20HL2P0C7V6 817 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 ACRP10323 421 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 HSD17B4P51659 736 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 CCL23P55773 120 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 CHMP4BP1P59074 171 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 LY6KQ17RY6 165 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 PSRC1Q6PGN9 363 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 NFXL1Q6ZNB6 911 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 RASEFQ8IZ41 740 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 SAMD3Q8N6K7 520 aa20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 CTCFLQ8NI51 663 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-212ENST00000508284 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-212ENST00000508284 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-212ENST00000508284 OPLAHO14841 1288 aa20.8■□□□□ 0.92
SQSTM1-212ENST00000508284 PRC1O43663 620 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms