RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 PPP1R12CQ9BZL4 782 aa20.89■□□□□ 0.93
SQSTM1-209ENST00000504627 GPHNQ9NQX3 736 aaPredicted RBP20.89■□□□□ 0.93
SQSTM1-209ENST00000504627 POLR3EQ9NVU0 708 aa20.89■□□□□ 0.93
SQSTM1-209ENST00000504627 MTMR10Q9NXD2 777 aa20.89■□□□□ 0.93
SQSTM1-209ENST00000504627 MAD2L2Q9UI95 211 aa20.89■□□□□ 0.93
SQSTM1-209ENST00000504627 NKRFO15226 690 aaKnown RBP eCLIP20.88■□□□□ 0.934e-8■□□□□ 9.4
SQSTM1-209ENST00000504627 TXNP10599 105 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 EPHB4P54760 987 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 PSMC6P62333 389 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 NECTIN1Q15223 517 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 CHST3Q7LGC8 479 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 TMEM199Q8N511 208 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 SYTL5Q8TDW5 730 aaPredicted RBP20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 NSUN6Q8TEA1 469 aaKnown RBP20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 KCNB2Q92953 911 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 TAAR1Q96RJ0 339 aa20.88■□□□□ 0.93
SQSTM1-209ENST00000504627 ZBTB5O15062 677 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 CFBP00751 764 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 MYL3P08590 195 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 TTLL4Q14679 1199 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 TMEM67Q5HYA8 995 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 ZNF697Q5TEC3 545 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 ARHGEF16Q5VV41 709 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 HOMER1Q86YM7 354 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 SLC43A3Q8NBI5 491 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 RMDN3Q96TC7 470 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 TAF6LQ9Y6J9 622 aa20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 LAMA2P24043 3122 aaKnown RBP20.87■□□□□ 0.93
SQSTM1-209ENST00000504627 PALM3A6NDB9 673 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 CD4P01730 458 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 PPIGQ13427 754 aaKnown RBP eCLIP20.86■□□□□ 0.939e-12■■□□□ 13.5
SQSTM1-209ENST00000504627 GRM4Q14833 912 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 STXBP2Q15833 593 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 CREB3L3Q68CJ9 461 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 FAM109BQ6ICB4 259 aaPredicted RBP20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 STOX1Q6ZVD7 989 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 CATIPQ7Z7H3 387 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 FAM161BQ96MY7 647 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 KIF2CQ99661 725 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 PCDHA1Q9Y5I3 950 aa20.86■□□□□ 0.93
SQSTM1-209ENST00000504627 GRIN2DO15399 1336 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 SMAD3P84022 425 aaKnown RBP20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 TRAF1Q13077 416 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 RABEP1Q15276 862 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 SEPT14Q6ZU15 432 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 IL27Q8NEV9 243 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 COPS5Q92905 334 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 IWS1Q96ST2 819 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 HIPK3Q9H422 1215 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 SENP2Q9HC62 589 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 COL20A1Q9P218 1284 aa20.85■□□□□ 0.93
SQSTM1-209ENST00000504627 SLC27A2O14975 620 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 CSF2RAP15509 400 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 EIF2AK2P19525 551 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 PURAQ00577 322 aaKnown RBP20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 MTMR8Q96EF0 704 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.84■□□□□ 0.932e-6■■■□□ 18.9
SQSTM1-209ENST00000504627 MTG1Q9BT17 334 aaPredicted RBP20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 TRPV6Q9H1D0 765 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 STXBP5LQ9Y2K9 1186 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 MYH6P13533 1939 aa20.84■□□□□ 0.93
SQSTM1-209ENST00000504627 B4GALT4O60513 344 aa20.83■□□□□ 0.93
SQSTM1-209ENST00000504627 CYP2C18P33260 490 aa20.83■□□□□ 0.93
SQSTM1-209ENST00000504627 TSGA10IPQ3SY00 556 aa20.83■□□□□ 0.93
SQSTM1-209ENST00000504627 PIGSQ96S52 555 aa20.83■□□□□ 0.93
SQSTM1-209ENST00000504627 SNX14Q9Y5W7 946 aa20.83■□□□□ 0.93
SQSTM1-209ENST00000504627 A6NJR5 290 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 KPNA6O60684 536 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 PPP1R11O60927 126 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 ARIH2O95376 493 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 ANTXR2P58335 489 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 TROAPQ12815 778 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 KRT32Q14532 448 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 FAM47CQ5HY64 1035 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 MB21D2Q8IYB1 491 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 SLC17A8Q8NDX2 589 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 IGDCC4Q8TDY8 1250 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 ALDH8A1Q9H2A2 487 aaPredicted RBP20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 RIOX1Q9H6W3 641 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 PXMP2Q9NR77 195 aa20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 MAP3K20Q9NYL2 800 aaKnown RBP20.82■□□□□ 0.92
SQSTM1-209ENST00000504627 PNMA6FA0A0J9YX94 578 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 EIF3JO75822 258 aaKnown RBP20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 GH1P01241 217 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 NR3C2P08235 984 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 SUPT20HL2P0C7V6 817 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 ACRP10323 421 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 HSD17B4P51659 736 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 CCL23P55773 120 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 CHMP4BP1P59074 171 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 LY6KQ17RY6 165 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 PSRC1Q6PGN9 363 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 NFXL1Q6ZNB6 911 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 RASEFQ8IZ41 740 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 SAMD3Q8N6K7 520 aa20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 CTCFLQ8NI51 663 aaPredicted RBP20.81■□□□□ 0.92
SQSTM1-209ENST00000504627 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 OPLAHO14841 1288 aa20.8■□□□□ 0.92
SQSTM1-209ENST00000504627 PRC1O43663 620 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms