RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 ODF2LQ9ULJ1 636 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 BICDL2A1A5D9 508 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 FSD2A1L4K1 749 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 C19orf81C9J6K1 198 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 NOP56O00567 594 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 PSMD6Q15008 389 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 LDLRAD1Q5T700 205 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PPP1R21Q6ZMI0 780 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 UBE3BQ7Z3V4 1068 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 DAAM2Q86T65 1068 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 TTC6Q86TZ1 520 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 TDRD5Q8NAT2 981 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 CCDC43Q96MW1 224 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 DPP7Q9UHL4 492 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 JRKLQ9Y4A0 524 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PSMA4P25789 261 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 E2F5Q15329 346 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 GIMAP6Q6P9H5 292 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 C1orf228Q6PIY5 440 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 USP17L2Q6R6M4 530 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 IQCA1Q86XH1 822 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PGBD3Q8N328 593 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 BORCS6Q96GS4 357 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 CD209Q9NNX6 404 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 PRKAG3Q9UGI9 489 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PGAP2Q9UHJ9 254 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PAIP2BQ9ULR5 123 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 LRRIQ1Q96JM4 1722 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 SMTNL1A8MU46 457 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 RRP8O43159 456 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 USP2O75604 605 aaPredicted RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 NOVA1P51513 510 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 CCDC30Q5VVM6 783 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 MCTP1Q6DN14 999 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 MFSD5Q6N075 450 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PRICKLE2Q7Z3G6 844 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 PRMT6Q96LA8 375 aaPredicted RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 NSUN3Q9H649 340 aaKnown RBP5.72□□□□□ -1.49
USP54-216ENST00000498143 HOMER2Q9NSB8 354 aa5.72□□□□□ -1.49
USP54-216ENST00000498143 SLC15A5A6NIM6 579 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 STRNO43815 780 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 ERLIN2O94905 339 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 NTRK1P04629 796 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 SKOR1P84550 965 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 GNL2Q13823 731 aaKnown RBP5.71□□□□□ -1.49
USP54-216ENST00000498143 IMMTQ16891 758 aaKnown RBP5.71□□□□□ -1.49
USP54-216ENST00000498143 C6orf132Q5T0Z8 1188 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 HEATR6Q6AI08 1181 aaKnown RBP5.71□□□□□ -1.49
USP54-216ENST00000498143 LMTK2Q8IWU2 1503 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 PBX4Q9BYU1 374 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 C22orf23Q9BZE7 217 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 SLITRK6Q9H5Y7 841 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 JADE2Q9NQC1 790 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 AGTPBP1Q9UPW5 1226 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 ZKSCAN5Q9Y2L8 839 aa5.71□□□□□ -1.49
USP54-216ENST00000498143 KIF2AO00139 706 aaPredicted RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 ZIC2O95409 532 aaPredicted RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 MBD3O95983 291 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 SLC3A2P08195 630 aaKnown RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 STAG3L1P0CL83 205 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 NFX1Q12986 1120 aaKnown RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 LRRFIP1Q32MZ4 808 aaKnown RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 CCDC40Q4G0X9 1142 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 CCDC144CPQ8IYA2 1237 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 GDPD5Q8WTR4 605 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 CCDC114Q96M63 670 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 SAMD11Q96NU1 681 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 MED4Q9NPJ6 270 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 SUGT1Q9Y2Z0 365 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 DPYSL4O14531 572 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 SEPT4O43236 478 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 TAF5LO75529 589 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 TPD52L1Q16890 204 aaPredicted RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 MTHFSDQ2M296 383 aaKnown RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 CFAP58Q5T655 872 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 EEPD1Q7L9B9 569 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 USP38Q8NB14 1042 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 ARMC2Q8NEN0 867 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 CHST13Q8NET6 341 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 ZCCHC14Q8WYQ9 949 aaKnown RBP5.71□□□□□ -1.5
USP54-216ENST00000498143 CCDC113Q9H0I3 377 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 ZSWIM4Q9H7M6 989 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 ZNF287Q9HBT7 754 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 PCDHB8Q9UN66 801 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 PCDHB13Q9Y5F0 798 aa5.71□□□□□ -1.5
USP54-216ENST00000498143 ZNF521Q96K83 1311 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 PLCD1P51178 756 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CCDC110Q8TBZ0 833 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 CHMP4CQ96CF2 233 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 VMP1Q96GC9 406 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 PHF12Q96QT6 1004 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 SH3GL1Q99961 368 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 TBC1D2Q9BYX2 928 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 TSPY26PQ9H489 355 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 SRCAPQ6ZRS2 3230 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 RFX7Q2KHR2 1363 aa5.7□□□□□ -1.5
USP54-216ENST00000498143 POLR3GO15318 223 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 FOSP01100 380 aaPredicted RBP5.7□□□□□ -1.5
USP54-216ENST00000498143 BASP1P80723 227 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms