RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 EXOC3O60645 756 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 ALAS1P13196 640 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 H2AFXP16104 143 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 NEDD9Q14511 834 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 GPATCH4Q5T3I0 446 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 PANX2Q96RD6 677 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 MPHOSPH6Q99547 160 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 GUCY1A2P33402 732 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 ASPRV1Q53RT3 343 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 CCDC26Q8TAB7 109 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 IMPG2Q9BZV3 1241 aa17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-209ENST00000494080 PCK1P35558 622 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 BAG6P46379 1132 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 UBXN2AP68543 259 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 TBC1D31Q96DN5 1066 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 KIAA1024Q9UPX6 916 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 OVOS2A0A0G2JMS6 1433 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 TCP1P17987 556 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 PTPREP23469 700 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 CTNNA1P35221 906 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 SNCBQ16143 134 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 MUM1L1Q5H9M0 696 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 L2HGDHQ9H9P8 463 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 CALUO43852 315 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 NKX1-1Q15270 411 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 NCAPGQ9BPX3 1015 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 FAM196BA6NMK8 535 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 DNM2P50570 870 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 MRPS25P82663 173 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 GUCY2DQ02846 1103 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 C2orf54Q08AI8 447 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 KLHL30Q0D2K2 578 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 BIRC3Q13489 604 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 TMEM47Q9BQJ4 181 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 BPIFA3Q9BQP9 254 aa17.93■□□□□ 0.46
CCDC88B-209ENST00000494080 FAM26FQ5R3K3 315 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 AMNQ9BXJ7 453 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 CLTAP09496 248 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 VSNL1P62760 191 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 MTF1Q14872 753 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 UBE2SQ16763 222 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 SGMS1Q86VZ5 419 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 SYNCQ9H7C4 482 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 SENP2Q9HC62 589 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 LRRC41Q15345 812 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 ASIC2Q16515 512 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 GKAP1Q5VSY0 366 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 DPH6Q7L8W6 267 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 IFT74Q96LB3 600 aa17.92■□□□□ 0.46
CCDC88B-209ENST00000494080 KIF20BQ96Q89 1820 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 PDCLQ13371 301 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 TMC4Q7Z404 712 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 N4BP2L2Q92802 583 aaPredicted RBP17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 PANK4Q9NVE7 773 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 BUB1O43683 1085 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 MAP3K9P80192 1104 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 TMOD4Q9NZQ9 345 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 MTRF1LQ9UGC7 380 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 ATP11AP98196 1134 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 SPATA31A1Q5TZJ5 1347 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 WDR19Q8NEZ3 1342 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 PAGE5Q96GU1 130 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 ABCC12Q96J65 1359 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 PLVAPQ9BX97 442 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 ADGRB2O60241 1585 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 KDM3AQ9Y4C1 1321 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 ZBED4O75132 1171 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 EEF2P13639 858 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 KCNJ6P48051 423 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 SMTNP53814 917 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 ANTXR2P58335 489 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 PABPC4Q13310 644 aaKnown RBP eCLIP17.91■□□□□ 0.462e-9■■□□□ 12.8
CCDC88B-209ENST00000494080 LARP4BQ92615 738 aaKnown RBP17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 KANSL2Q9H9L4 492 aa17.91■□□□□ 0.46
CCDC88B-209ENST00000494080 CXCR5P32302 372 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 GGCXP38435 758 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 RESP18Q5W5W9 173 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 GSPT2Q8IYD1 628 aaKnown RBP17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 TUBGCP2Q9BSJ2 902 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 ADGRG1Q9Y653 693 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 B4DLN1 442 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 MFAP3LO75121 409 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 TBC1D8O95759 1140 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 COA1Q9GZY4 146 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 KDM6AO15550 1401 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 TESPA1A2RU30 521 aaPredicted RBP17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 NDUFA10O95299 355 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 TNFAIP3P21580 790 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 SLC8A1P32418 973 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 EPHB4P54760 987 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 CC2D2BQ6DHV5 1058 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 LINC00116Q8NCU8 138 aa17.9■□□□□ 0.46
CCDC88B-209ENST00000494080 SRGAP2O75044 1071 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 CYP2J2P51589 502 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 NNTQ13423 1086 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 RPS6KA1Q15418 735 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 GRIPAP1Q4V328 841 aa17.89■□□□□ 0.46
CCDC88B-209ENST00000494080 FNBP1Q96RU3 617 aa17.89■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms