RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, human

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF3A-209	ENST00000492270	PRDM5	Q9NQX1	630 aa	Predicted RBP	28.59	■■■□□ 2.17
UPF3A-209	ENST00000492270	SNX14	Q9Y5W7	946 aa		28.59	■■■□□ 2.17
UPF3A-209	ENST00000492270	CALM1	P0DP23	149 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	CALM2	P0DP24	149 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	CALM3	P0DP25	149 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	MDM2	Q00987	491 aa	Predicted RBP	28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	FSCN1	Q16658	493 aa	Known RBP	28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	SH3RF1	Q7Z6J0	888 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	GLT1D1	Q96MS3	346 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	PDLIM7	Q9NR12	457 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	PXMP2	Q9NR77	195 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270	BRPF3	Q9ULD4	1205 aa		28.58	■■■□□ 2.17
UPF3A-209	ENST00000492270		B4DLN1	442 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	PQBP1	O60828	265 aa	Known RBP	28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	REC8	O95072	547 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	MRPL12	P52815	198 aa	Known RBP	28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	ARHGEF16	Q5VV41	709 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	APOA5	Q6Q788	366 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	COPS5	Q92905	334 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	RRP36	Q96EU6	259 aa	Known RBP	28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	LZTS2	Q9BRK4	669 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270		Q9Y3F1	56 aa		28.57	■■■□□ 2.16
UPF3A-209	ENST00000492270	ARIH2	O95376	493 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	SMARCA1	P28370	1054 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	GNAQ	P50148	359 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	TRAF1	Q13077	416 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	PPP2R5B	Q15173	497 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	CXCL17	Q6UXB2	119 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	FANCB	Q8NB91	859 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	SCFD2	Q8WU76	684 aa		28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	JAKMIP1	Q96N16	626 aa	Known RBP	28.56	■■■□□ 2.16
UPF3A-209	ENST00000492270	ELP1	O95163	1332 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	hCG_1642624	A0A1W2PR95	340 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	BMP8B	P34820	402 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	FXR1	P51114	621 aa	Known RBP eCLIP	28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	TMTC3	Q6ZXV5	915 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	CCDC82	Q8N4S0	544 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	VTI1A	Q96AJ9	217 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	IWS1	Q96ST2	819 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	PRKAG2	Q9UGJ0	569 aa		28.55	■■■□□ 2.16
UPF3A-209	ENST00000492270	TRIM43B	A6NCK2	446 aa		28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	SEPT14	Q6ZU15	432 aa		28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	OR6J1	Q8NGC5	347 aa		28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	TRIM43	Q96BQ3	446 aa	Predicted RBP	28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	MAP3K20	Q9NYL2	800 aa	Known RBP	28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	SEC63	Q9UGP8	760 aa	Known RBP	28.54	■■■□□ 2.16
UPF3A-209	ENST00000492270	GCOM1	H8Y6P7	765 aa	Predicted RBP	28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	NR3C2	P08235	984 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	HMGB1	P09429	215 aa	Known RBP	28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	CLTB	P09497	229 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	POLR2M	P0CAP2	368 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	TXN	P10599	105 aa	Known RBP	28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	STXBP2	Q15833	593 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	SYNE3	Q6ZMZ3	975 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	FCHSD1	Q86WN1	690 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	IL31RA	Q8NI17	732 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270	DOCK5	Q9H7D0	1870 aa		28.53	■■■□□ 2.16
UPF3A-209	ENST00000492270		A0A0U1RQG5	324 aa	Predicted RBP	28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	KLF18	A0A0U1RQI7	1052 aa		28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	TTLL4	Q14679	1199 aa		28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	ANKRD33	Q7Z3H0	272 aa		28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	SAMD3	Q8N6K7	520 aa		28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	PDCD2L	Q9BRP1	358 aa		28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	UBE2O	Q9C0C9	1292 aa	Known RBP	28.52	■■■□□ 2.16
UPF3A-209	ENST00000492270	CNTNAP5	Q8WYK1	1306 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	ZBTB43	O43298	467 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	MYCL	P12524	364 aa	Predicted RBP	28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	CDK7	P50613	346 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	FAAP100	Q0VG06	881 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	PGM5	Q15124	567 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	CCDC62	Q6P9F0	684 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	BLOC1S2	Q6QNY1	142 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270		Q6ZUG5	572 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270	SCN10A	Q9Y5Y9	1956 aa		28.51	■■■□□ 2.15
UPF3A-209	ENST00000492270		A0A1W2PPC1	479 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	ARVCF	O00192	962 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	NKRF	O15226	690 aa	Known RBP eCLIP	28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	ZEB2	O60315	1214 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	ITGB8	P26012	769 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	RTN1	Q16799	776 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	LY6K	Q17RY6	165 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	ZFP91	Q96JP5	570 aa	Predicted RBP	28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	TOX2	Q96NM4	488 aa		28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	LBHD1	Q9BQE6	289 aa	Predicted RBP	28.5	■■■□□ 2.15
UPF3A-209	ENST00000492270	GRIN2D	O15399	1336 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	GOLGA8A	A7E2F4	631 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	GOLGA8B	A8MQT2	603 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	PSMC6	P62333	389 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	FGD1	P98174	961 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	APOBR	Q0VD83	1088 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	BAD	Q92934	168 aa		28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	NAP1L2	Q9ULW6	460 aa	Predicted RBP	28.49	■■■□□ 2.15
UPF3A-209	ENST00000492270	DCDC2C	A8MYV0	355 aa		28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	EIF3J	O75822	258 aa	Known RBP	28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	CABYR	O75952	493 aa		28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	RGS20	O76081	388 aa		28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	SLC34A2	O95436	690 aa		28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	CAST	P20810	708 aa	Known RBP	28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	RPS6KB1	P23443	525 aa		28.48	■■■□□ 2.15
UPF3A-209	ENST00000492270	CPT1A	P50416	773 aa		28.48	■■■□□ 2.15

Retrieved 100 of 20,778 RNA–protein pairs in 16 ms