RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TTLL3Q9Y4R7 772 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 DLATP10515 647 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 MAN1A1P33908 653 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 FKBP3Q00688 224 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 DMP1Q13316 513 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 INTS9Q9NV88 658 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 THRAP3Q9Y2W1 955 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 JRKLQ9Y4A0 524 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 ATP1A3P13637 1013 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 IL6STP40189 918 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 NSFP46459 744 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 LRRC41Q15345 812 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 ODR4Q5SWX8 454 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 GPATCH4Q5T3I0 446 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 FBXO38Q6PIJ6 1188 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 CAPN12Q6ZSI9 719 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 CCDC197Q8NCU1 140 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 CCDC127Q96BQ5 260 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 hCG_1984214I3L0E3 225 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 PGRMC1O00264 195 aaKnown RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 MOCS3O95396 460 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 ALAS1P13196 640 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 BSPRYQ5W0U4 402 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 EFCAB13Q8IY85 973 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 ZNF713Q8N859 430 aaPredicted RBP17.94■□□□□ 0.46
COL7A1-210ENST00000487017 YEATS2Q9ULM3 1422 aa17.94■□□□□ 0.46
COL7A1-210ENST00000487017 NLRP1Q9C000 1473 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 CCNE1P24864 410 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 PSMC2P35998 433 aaKnown RBP17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MFAP3P55082 362 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 TOB2Q14106 344 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MCF2L2Q86YR7 1114 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MICAL1Q8TDZ2 1067 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 AFG3L2Q9Y4W6 797 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 TMEM232C9JQI7 657 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 CLTAP09496 248 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 SCNN1DP51172 638 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 BFSP1Q12934 665 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MESDQ14696 234 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 TBCKQ8TEA7 893 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MAGOHBQ96A72 148 aaKnown RBP17.93■□□□□ 0.46
COL7A1-210ENST00000487017 GAP43P17677 238 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 PABPC4Q13310 644 aaKnown RBP eCLIP17.93■□□□□ 0.46
COL7A1-210ENST00000487017 MAP3K21Q5TCX8 1036 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 STK32BQ9NY57 414 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 SUN1O94901 812 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 GCFC2P16383 781 aaKnown RBP17.93■□□□□ 0.46
COL7A1-210ENST00000487017 RESP18Q5W5W9 173 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 GLG1Q92896 1179 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 AIFM3Q96NN9 605 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 AMNQ9BXJ7 453 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 ZNF148Q9UQR1 794 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 DAAM1Q9Y4D1 1078 aa17.93■□□□□ 0.46
COL7A1-210ENST00000487017 TNNC2P02585 160 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 SLC12A2P55011 1212 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 IFT88Q13099 833 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 PRKG1Q13976 671 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.92■□□□□ 0.46
COL7A1-210ENST00000487017 HAUS1Q96CS2 278 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 IRX4P78413 519 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 SATB1Q01826 763 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 ZBTB8OSQ8IWT0 167 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 LRRC8CQ8TDW0 803 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 PTPN22Q9Y2R2 807 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 IVNS1ABPQ9Y6Y0 642 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 ASAP1Q9ULH1 1129 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.92■□□□□ 0.46
COL7A1-210ENST00000487017 ARHGAP42A6NI28 874 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 CRKLP46109 303 aaKnown RBP17.92■□□□□ 0.46
COL7A1-210ENST00000487017 TCP11X2Q5H9J9 407 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 PPIP5K2O43314 1243 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 EIF4A3P38919 411 aaKnown RBP17.92■□□□□ 0.46
COL7A1-210ENST00000487017 PBKQ96KB5 322 aa17.92■□□□□ 0.46
COL7A1-210ENST00000487017 HOXA7P31268 230 aaPredicted RBP17.91■□□□□ 0.46
COL7A1-210ENST00000487017 SCYL2Q6P3W7 929 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 CEP120Q8N960 986 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 NSMCE1Q8WV22 266 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 GBP5Q96PP8 586 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 MFAP3LO75121 409 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 CASP8Q14790 479 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 PCDHA13Q9Y5I0 950 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 ARHGAP31Q2M1Z3 1444 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 KIF3CO14782 793 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 CXCR5P32302 372 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 LMNB2Q03252 620 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 PTK2Q05397 1052 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 TRIM68Q6AZZ1 485 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 FAM186BQ8IYM0 893 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 NACA2Q9H009 215 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 PREX2Q70Z35 1606 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 XDHP47989 1333 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 POLR2BP30876 1174 aaKnown RBP17.91■□□□□ 0.46
COL7A1-210ENST00000487017 YARSP54577 528 aaKnown RBP17.91■□□□□ 0.46
COL7A1-210ENST00000487017 BPIFB4P59827 614 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 IL9RQ01113 521 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 ARID5BQ14865 1188 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 LRCH2Q5VUJ6 765 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 FAM133AQ8N9E0 248 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 NT5C1BQ96P26 610 aa17.91■□□□□ 0.46
COL7A1-210ENST00000487017 ZBTB1Q9Y2K1 713 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms