RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 USP17L19D6RCP7 530 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 USP17L20D6RJB6 530 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 PEX10O60683 326 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 THBS1P07996 1170 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 FOSL2P15408 326 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 SRSF11Q05519 484 aaKnown RBP8.15□□□□□ -1.1
HDAC3-209ENST00000486618 USP17L24Q0WX57 530 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 SHHQ15465 462 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 ALDH1L2Q3SY69 923 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 GNASQ5JWF2 1037 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 NOP9Q86U38 636 aaKnown RBP8.15□□□□□ -1.1
HDAC3-209ENST00000486618 ZNF384Q8TF68 577 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 MYLIPQ8WY64 445 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 GTPBP3Q969Y2 492 aaKnown RBP8.15□□□□□ -1.1
HDAC3-209ENST00000486618 EVI5LQ96CN4 794 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 NEUROD6Q96NK8 337 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 SPOCK3Q9BQ16 436 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 MAF1Q9H063 256 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 NUCKS1Q9H1E3 243 aaKnown RBP8.15□□□□□ -1.1
HDAC3-209ENST00000486618 GPAMQ9HCL2 828 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 HMG20BQ9P0W2 317 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 PNMA2Q9UL42 364 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 ZBTB21Q9ULJ3 1066 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 ATP11BQ9Y2G3 1177 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 RPS6KL1Q9Y6S9 549 aa8.15□□□□□ -1.1
HDAC3-209ENST00000486618 MAST2Q6P0Q8 1798 aa8.15□□□□□ -1.11
HDAC3-209ENST00000486618 UNC80Q8N2C7 3258 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 A0A1B0GTH6 734 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 CCDC194A0A1B0GVG4 234 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 POM121CA8CG34 1229 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 HLA-DOAP06340 250 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 HOXC6P09630 235 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 UQCRFS1P1P0C7P4 283 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 SKIP12755 728 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 USP14P54578 494 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 TFCP2Q12800 502 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 FOXR1Q6PIV2 292 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 SLC39A5Q6ZMH5 540 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 TBC1D9Q6ZT07 1266 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 DPH6Q7L8W6 267 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 METTL16Q86W50 562 aaKnown RBP8.14□□□□□ -1.11
HDAC3-209ENST00000486618 SH3RF3Q8TEJ3 882 aaPredicted RBP8.14□□□□□ -1.11
HDAC3-209ENST00000486618 FEZ1Q99689 392 aa8.14□□□□□ -1.11
HDAC3-209ENST00000486618 PRDM5Q9NQX1 630 aaPredicted RBP8.14□□□□□ -1.11
HDAC3-209ENST00000486618 TMA7Q9Y2S6 64 aaKnown RBP8.14□□□□□ -1.11
HDAC3-209ENST00000486618 RLFQ13129 1914 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 GDF11O95390 407 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 EML3Q32P44 896 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 NAALADL2Q58DX5 795 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 C9orf50Q5SZB4 431 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 GJC2Q5T442 439 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-209ENST00000486618 NAA16Q6N069 864 aaPredicted RBP8.13□□□□□ -1.11
HDAC3-209ENST00000486618 DPP9Q86TI2 863 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 MAPKAPK5Q8IW41 473 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 CACTIN-AS1Q8N1I8 211 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 CEP120Q8N960 986 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 CXorf38Q8TB03 319 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 ADAMTS19Q8TE59 1207 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 RHBDD1Q8TEB9 315 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 TGFBRAP1Q8WUH2 860 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 ANP32BQ92688 251 aaKnown RBP8.13□□□□□ -1.11
HDAC3-209ENST00000486618 BADQ92934 168 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 C12orf42Q96LP6 360 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 SMC4Q9NTJ3 1288 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 AATFQ9NY61 560 aaKnown RBP eCLIP8.13□□□□□ -1.11
HDAC3-209ENST00000486618 SLC5A4Q9NY91 659 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 FLRT1Q9NZU1 646 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.13□□□□□ -1.11
HDAC3-209ENST00000486618 COMMD10Q9Y6G5 202 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 LTBP2Q14767 1821 aa8.13□□□□□ -1.11
HDAC3-209ENST00000486618 hCG_2014768A0A024R1R8 64 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 TMEM229AB2RXF0 380 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 SRGAP3O43295 1099 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 STRNO43815 780 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 ARHGEF15O94989 841 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 CYBAP13498 195 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 PAX3P23760 479 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 CYP2C19P33261 490 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 JAG1P78504 1218 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 GRB14Q14449 540 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 OLFML2BQ68BL8 750 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 PI16Q6UXB8 463 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 LBX2Q6XYB7 198 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 CATSPERGQ6ZRH7 1159 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 TRERF1Q96PN7 1200 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 API5Q9BZZ5 524 aaKnown RBP8.12□□□□□ -1.11
HDAC3-209ENST00000486618 TTYH1Q9H313 450 aaPredicted RBP8.12□□□□□ -1.11
HDAC3-209ENST00000486618 DNAJC18Q9H819 358 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 KLHL42Q9P2K6 505 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 PALD1Q9ULE6 856 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 TACC3Q9Y6A5 838 aa8.12□□□□□ -1.11
HDAC3-209ENST00000486618 FLT1P17948 1338 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 ZNF521Q96K83 1311 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 SIPA1L1O43166 1804 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.11□□□□□ -1.11
HDAC3-209ENST00000486618 SEPT4O43236 478 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 CNMDO75829 334 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 GH2P01242 217 aa8.11□□□□□ -1.11
HDAC3-209ENST00000486618 GNAI3P08754 354 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms