RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RAB27AP51159 221 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 FAPQ12884 760 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 NKPD1Q17RQ9 610 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 PLA2G4EQ3MJ16 856 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 TMEM177Q53S58 311 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 RNF111Q6ZNA4 994 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 FKBP9P1Q75LS8 142 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 ZNF765Q7L2R6 523 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 OVCH1Q7RTY7 1134 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 CHST14Q8NCH0 376 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 PTCHD1Q96NR3 888 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 CCDC8Q9H0W5 538 aaPredicted RBP6.92□□□□□ -1.3
UPF3B-203ENST00000478840 CABP5Q9NP86 173 aa6.92□□□□□ -1.3
UPF3B-203ENST00000478840 NPHP3-ACAD11A0A0J9YXS1 232 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 FAM170BA6NMN3 283 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 GSTA4O15217 222 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 GAS7O60861 476 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 SOD2P04179 222 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 SYPP08247 313 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 CLCN7P51798 805 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 RBM10P98175 930 aaKnown RBP6.91□□□□□ -1.3
UPF3B-203ENST00000478840 OCRLQ01968 901 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 PIN1Q13526 163 aaPredicted RBP6.91□□□□□ -1.3
UPF3B-203ENST00000478840 SART3Q15020 963 aaKnown RBP6.91□□□□□ -1.3
UPF3B-203ENST00000478840 FAM47CQ5HY64 1035 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 C16orf59Q7L2K0 433 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 SPACA3Q8IXA5 215 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 SHISA5Q8N114 240 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 NXPE1Q8N323 547 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 PANK1Q8TE04 598 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 CDH19Q9H159 772 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 CDIP1Q9H305 208 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 STOML1Q9UBI4 398 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 TRHDEQ9UKU6 1024 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 TCFL5Q9UL49 500 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 ZKSCAN5Q9Y2L8 839 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 COQ6Q9Y2Z9 468 aa6.91□□□□□ -1.3
UPF3B-203ENST00000478840 WDR64B1ANS9 1081 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 FAM47E-STBD1D6RA91 191 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 PRKD3O94806 890 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 FBXO21O94952 628 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 MAP4K4O95819 1239 aaPredicted RBP6.9□□□□□ -1.3
UPF3B-203ENST00000478840 SCGB1D2O95969 90 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 YBX3P16989 372 aaKnown RBP eCLIP6.9□□□□□ -1.3
UPF3B-203ENST00000478840 TPP2P29144 1249 aaPredicted RBP6.9□□□□□ -1.3
UPF3B-203ENST00000478840 IL2P60568 153 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 CPSF6Q16630 551 aaKnown RBP eCLIP6.9□□□□□ -1.3
UPF3B-203ENST00000478840 INF2Q27J81 1249 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 DUSP27Q5VZP5 1158 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 MBLAC2Q68D91 279 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 RNF43Q68DV7 783 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 CCSAPQ6IQ19 270 aaPredicted RBP6.9□□□□□ -1.3
UPF3B-203ENST00000478840 CYP2R1Q6VVX0 501 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 OTOP1Q7RTM1 612 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 PASD1Q8IV76 773 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 COG1Q8WTW3 980 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 FBXW5Q969U6 566 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 YIPF4Q9BSR8 244 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 EMC7Q9NPA0 242 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 GABBR1Q9UBS5 961 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 ZNF281Q9Y2X9 895 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 U3KQE9 123 aa6.9□□□□□ -1.3
UPF3B-203ENST00000478840 ULK1O75385 1050 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 F13BP05160 661 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 ATP2A2P16615 1042 aaKnown RBP6.89□□□□□ -1.31
UPF3B-203ENST00000478840 GTF2A2P52657 109 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 LACTBP83111 547 aaPredicted RBP6.89□□□□□ -1.31
UPF3B-203ENST00000478840 LSAMPQ13449 338 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 LRRC41Q15345 812 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 ARHGAP44Q17R89 818 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 INAVAQ3KP66 663 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 ATP13A4Q4VNC1 1196 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 TMPRSS7Q7RTY8 843 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 CCAR1Q8IX12 1150 aaKnown RBP6.89□□□□□ -1.31
UPF3B-203ENST00000478840 CCDC146Q8IYE0 955 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 METTL22Q9BUU2 404 aaPredicted RBP6.89□□□□□ -1.31
UPF3B-203ENST00000478840 FOXP3Q9BZS1 431 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 IPPKQ9H8X2 491 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 SEMA3GQ9NS98 782 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 AP5S1Q9NUS5 200 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 ZIM2Q9NZV7 527 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 ADGRE2Q9UHX3 823 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 TNKSO95271 1327 aa6.89□□□□□ -1.31
UPF3B-203ENST00000478840 TMEM82A0PJX8 343 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CCDC66A2RUB6 948 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 MYO1BO43795 1136 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 TBC1D8O95759 1140 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CEACAM5P06731 702 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 SRGAP2CP0DJJ0 459 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 GRK2P25098 689 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 GRK3P35626 688 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CHRNA4P43681 627 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 ERVK-21P61565 698 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CREB3L3Q68CJ9 461 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 NXNQ6DKJ4 435 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 PRR23CQ6ZRP0 262 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 ZBTB46Q86UZ6 589 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CHPFQ8IZ52 775 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 Q8N1Y9 231 aa6.88□□□□□ -1.31
UPF3B-203ENST00000478840 CBARPQ8N350 705 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms