RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 ANAPC4Q9UJX5 808 aa10.84□□□□□ -0.67
CMC1-209ENST00000477739 EPHB6O15197 1021 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 ECM2O94769 699 aaPredicted RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 KIAA0754O94854 1291 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 RCAN1P53805 252 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 KRT83P78385 493 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 FBXW10Q5XX13 1052 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 FCHSD1Q86WN1 690 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 ZNF579Q8NAF0 562 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 ZNF622Q969S3 477 aaKnown RBP eCLIP10.83□□□□□ -0.685e-12■□□□□ 9.1
CMC1-209ENST00000477739 MXD3Q9BW11 206 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 ZBTB21Q9ULJ3 1066 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 HERC4Q5GLZ8 1057 aaPredicted RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 ZNF658Q5TYW1 1059 aaPredicted RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 FAM196AQ6ZSG2 479 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 RSRC2Q7L4I2 434 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 TRIML1Q8N9V2 468 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 CCDC43Q96MW1 224 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 EPB41L5Q9HCM4 733 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 UBR2Q8IWV8 1755 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 SHTN1A0MZ66 631 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 FRMD3A2A2Y4 597 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 EIF3CLB5ME19 914 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 CEP104O60308 925 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 PCP11498 1178 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 GSTO1P78417 241 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 TBX2Q13207 712 aaPredicted RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 TRADDQ15628 312 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 DDX42Q86XP3 938 aaKnown RBP eCLIP10.83□□□□□ -0.68
CMC1-209ENST00000477739 CEP57Q86XR8 500 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 FAM133AQ8N9E0 248 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 UBLCP1Q8WVY7 318 aaPredicted RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 EIF3CQ99613 913 aaKnown RBP10.83□□□□□ -0.68
CMC1-209ENST00000477739 TOGARAM1Q9Y4F4 1720 aa10.83□□□□□ -0.68
CMC1-209ENST00000477739 LRRC53A6NM62 1247 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 COPB2P35606 906 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 TAF4BQ92750 862 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 ALS2CR12Q96Q35 445 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 ZNF287Q9HBT7 754 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 USP21Q9UK80 565 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 SCAF8Q9UPN6 1271 aaKnown RBP10.82□□□□□ -0.68
CMC1-209ENST00000477739 EIF4E1BA6NMX2 242 aaKnown RBP10.82□□□□□ -0.68
CMC1-209ENST00000477739 HSF2BPO75031 334 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 GNAQP50148 359 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 NFIXQ14938 502 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 GOLGA5Q8TBA6 731 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 ZNF384Q8TF68 577 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 EYA3Q99504 573 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 LSM14BQ9BX40 385 aaKnown RBP10.82□□□□□ -0.68
CMC1-209ENST00000477739 PCDHB13Q9Y5F0 798 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 EBAG9O00559 213 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 KCNK3O14649 394 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 CLIC2O15247 247 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 STAT3P40763 770 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 SLC1A4P43007 532 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 HERVK_113P62684 666 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 BARGINQ6ZT62 677 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 PHLDB2Q86SQ0 1253 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 CCDC25Q86WR0 208 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 SPICE1Q8N0Z3 855 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 ELMO3Q96BJ8 720 aa10.82□□□□□ -0.68
CMC1-209ENST00000477739 LRP6O75581 1613 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 GUCY1A3Q02108 690 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 CALCRLQ16602 461 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 SV2BQ7L1I2 683 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 TBC1D5Q92609 795 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 MRRFQ96E11 262 aaKnown RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 RWDD2AQ9UIY3 292 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 L1RE1Q9UN81 338 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 REXO2Q9Y3B8 237 aaKnown RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 CNTNAP5Q8WYK1 1306 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L5A8MUK1 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 DDX39AO00148 427 aaKnown RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 ACTN1P12814 892 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 ZNF76P36508 570 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 ARHGAP25P42331 645 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 KIF11P52732 1056 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 SEC24CP53992 1094 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 ATP2C1P98194 919 aaPredicted RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 WHAMMP3Q1A5X7 153 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 KIAA0753Q2KHM9 967 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 CFAP58Q5T655 872 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L15C9J2P7 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L13C9JLJ4 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L11C9JVI0 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L18D6R9N7 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L22D6RA61 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L17D6RBQ6 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L19D6RCP7 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L20D6RJB6 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 POTEB2H3BUK9 544 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 SORBS3O60504 671 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 SARSP49591 514 aaKnown RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 IFFO1Q0D2I5 559 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L24Q0WX57 530 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 NONOQ15233 471 aaKnown RBP eCLIP10.81□□□□□ -0.68
CMC1-209ENST00000477739 PFKFB3Q16875 520 aaPredicted RBP10.81□□□□□ -0.68
CMC1-209ENST00000477739 DOK7Q18PE1 504 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 CEP85LQ5SZL2 805 aa10.81□□□□□ -0.68
CMC1-209ENST00000477739 USP17L6PQ6QN14 398 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms