RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 PXMP2Q9NR77 195 aa11.19□□□□□ -0.62
HDAC3-208ENST00000476739 FAM184BQ9ULE4 1060 aa11.19□□□□□ -0.62
HDAC3-208ENST00000476739 STXBP3O00186 592 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 ADAMTS3O15072 1205 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 MYCNP04198 464 aaPredicted RBP11.18□□□□□ -0.62
HDAC3-208ENST00000476739 RARBP10826 455 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 SMPD1P17405 629 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
HDAC3-208ENST00000476739 PDE4DQ08499 809 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 PPP2R5BQ15173 497 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 UBE2SQ16763 222 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 ME3Q16798 604 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 ARHGEF16Q5VV41 709 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 ANKLE1Q8NAG6 615 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 IL31RAQ8NI17 732 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 NSUN6Q8TEA1 469 aaKnown RBP11.18□□□□□ -0.62
HDAC3-208ENST00000476739 XPNPEP3Q9NQH7 507 aa11.18□□□□□ -0.62
HDAC3-208ENST00000476739 GNEQ9Y223 722 aaKnown RBP11.18□□□□□ -0.62
HDAC3-208ENST00000476739 ALPK3Q96L96 1907 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 SYNRGQ9UMZ2 1314 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 LOC102724159A0A0B4J2E5 919 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 CCDC196A0A1B0GTZ2 297 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 CTAGE5O15320 804 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PRPF3O43395 683 aaKnown RBP11.17□□□□□ -0.62
HDAC3-208ENST00000476739 ADAMTS4O75173 837 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 ARIH2O95376 493 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 NR3C2P08235 984 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 COL6A1P12109 1028 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 IFNAR1P17181 557 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 TNFAIP2Q03169 654 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 TRAF1Q13077 416 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PGM5Q15124 567 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PWP2Q15269 919 aaKnown RBP11.17□□□□□ -0.62
HDAC3-208ENST00000476739 LRRC41Q15345 812 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PFKFB3Q16875 520 aaPredicted RBP11.17□□□□□ -0.62
HDAC3-208ENST00000476739 SAMD3Q8N6K7 520 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PDCD2LQ9BRP1 358 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 SLC26A6Q9BXS9 759 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 PSTPIP2Q9H939 334 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 VTA1Q9NP79 307 aa11.17□□□□□ -0.62
HDAC3-208ENST00000476739 MAP3K20Q9NYL2 800 aaKnown RBP11.17□□□□□ -0.62
HDAC3-208ENST00000476739 KIAA1217Q5T5P2 1943 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 RBM47A0AV96 593 aaKnown RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 PIK3CDO00329 1044 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 DNM1LO00429 736 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 PFKFB2O60825 505 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 DUSP11O75319 330 aaKnown RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 RGS20O76081 388 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 CTDNEP1O95476 244 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 MYCLP12524 364 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 SCG2P13521 617 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 NAPAP54920 295 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 ST3GAL1Q11201 340 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 CCSAPQ6IQ19 270 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 SEPT14Q6ZU15 432 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 NECAB2Q7Z6G3 386 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 NECAB1Q8N987 351 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 SMARCC2Q8TAQ2 1214 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 COPS5Q92905 334 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 PGBD1Q96JS3 809 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 AIFM3Q96NN9 605 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 IWS1Q96ST2 819 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 RNF26Q9BY78 433 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 SENP6Q9GZR1 1112 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 SLKQ9H2G2 1235 aaPredicted RBP11.16□□□□□ -0.62
HDAC3-208ENST00000476739 C11orf49Q9H6J7 331 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 BARHL2Q9NY43 387 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 PCDH10Q9P2E7 1040 aa11.16□□□□□ -0.62
HDAC3-208ENST00000476739 FRMPD4Q14CM0 1322 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 SMCO2A6NFE2 343 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 CAPN2P17655 700 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 GJA9P57773 515 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 MRPS9P82933 396 aaKnown RBP11.15□□□□□ -0.62
HDAC3-208ENST00000476739 BEX3Q00994 111 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 STXBP2Q15833 593 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 DUSP28Q4G0W2 176 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 IQSEC1Q6DN90 963 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 TLK2Q86UE8 772 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 VSIG10LQ86VR7 867 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 ARRDC4Q8NCT1 418 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 KLHDC9Q8NEP7 349 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 FERMT2Q96AC1 680 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 BACH2Q9BYV9 841 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 WDR11Q9BZH6 1224 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 UPF3AQ9H1J1 476 aaKnown RBP11.15□□□□□ -0.62
HDAC3-208ENST00000476739 RIC8AQ9NPQ8 531 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 TMEM260Q9NX78 707 aa11.15□□□□□ -0.62
HDAC3-208ENST00000476739 B4DLN1 442 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 CPLX1O14810 134 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 DYNC1LI2O43237 492 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 EIF3JO75822 258 aaKnown RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 C6orf222P0C671 652 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 CLK2P49760 499 aaKnown RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 MRPL12P52815 198 aaKnown RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 ATN1P54259 1190 aaPredicted RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 SSRP1Q08945 709 aaKnown RBP11.14□□□□□ -0.63
HDAC3-208ENST00000476739 ANKRD1Q15327 319 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 KCNA10Q16322 511 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 LY6KQ17RY6 165 aa11.14□□□□□ -0.63
HDAC3-208ENST00000476739 PPP1R18Q6NYC8 613 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms