RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 FDX1P10109 184 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 ARHGAP8P85298 464 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 PWP2Q15269 919 aaKnown RBP9.73□□□□□ -0.85
USP54-211ENST00000474929 ANGPT1Q15389 498 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 PTGISQ16647 500 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 KIAA1755Q5JYT7 1200 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 SESTD1Q86VW0 696 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 CCDC105Q8IYK2 499 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 EFHBQ8N7U6 833 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 PRPF38AQ8NAV1 312 aaKnown RBP9.73□□□□□ -0.85
USP54-211ENST00000474929 CYP2W1Q8TAV3 490 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 NEUROD6Q96NK8 337 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 RTP3Q9BQQ7 232 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 RTKNQ9BST9 563 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 USP44Q9H0E7 712 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 ACAD9Q9H845 621 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 INCENPQ9NQS7 918 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 FBXO28Q9NVF7 368 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 CDV3Q9UKY7 258 aaKnown RBP9.73□□□□□ -0.85
USP54-211ENST00000474929 COG6Q9Y2V7 657 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 NR2E1Q9Y466 385 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 WDR87Q6ZQQ6 2873 aa9.73□□□□□ -0.85
USP54-211ENST00000474929 SOBPA7XYQ1 873 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 LGR5O75473 907 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 PDGFBP01127 241 aaPredicted RBP9.72□□□□□ -0.85
USP54-211ENST00000474929 LMNB2Q03252 620 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 ADGRA1Q86SQ6 560 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 FAM133AQ8N9E0 248 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 PLVAPQ9BX97 442 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 ATG2AQ2TAZ0 1938 aa9.72□□□□□ -0.85
USP54-211ENST00000474929 NBNO60934 754 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 CYP7A1P22680 504 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 EXOSC9Q06265 439 aaKnown RBP9.71□□□□□ -0.86
USP54-211ENST00000474929 TKFCQ3LXA3 575 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 KIAA1211Q6ZU35 1233 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 FIBCD1Q8N539 461 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 KREMEN2Q8NCW0 462 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 OR6J1Q8NGC5 347 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 SECISBP2LQ93073 1101 aaKnown RBP9.71□□□□□ -0.86
USP54-211ENST00000474929 IGFLR1Q9H665 355 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 KANSL2Q9H9L4 492 aa9.71□□□□□ -0.86
USP54-211ENST00000474929 MYO7AQ13402 2215 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 CKBP12277 381 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 AOC1P19801 751 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 PLCD1P51178 756 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 DYNLL1P63167 89 aaKnown RBP9.7□□□□□ -0.86
USP54-211ENST00000474929 NAALADL2Q58DX5 795 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 CCDC158Q5M9N0 1113 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 TTC39AQ5SRH9 613 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 FAM83BQ5T0W9 1011 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 TAPT1Q6NXT6 567 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 FBXO16Q8IX29 292 aaPredicted RBP9.7□□□□□ -0.86
USP54-211ENST00000474929 AMOTL1Q8IY63 956 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 CPXCR1Q8N123 301 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 SUSD6Q92537 303 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 TOP1MTQ969P6 601 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 MPHOSPH6Q99547 160 aaKnown RBP9.7□□□□□ -0.86
USP54-211ENST00000474929 RIPK3Q9Y572 518 aa9.7□□□□□ -0.86
USP54-211ENST00000474929 TRIP12Q14669 1992 aaPredicted RBP9.7□□□□□ -0.86
USP54-211ENST00000474929 SETXQ7Z333 2677 aaKnown RBP9.69□□□□□ -0.86
USP54-211ENST00000474929 LINC01565O15544 149 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 RAD21O60216 631 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 BMPR1AP36894 532 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 SLC4A3P48751 1232 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 TFCP2Q12800 502 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 PTK7Q13308 1070 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 PPP2R5BQ15173 497 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 P2RX5Q93086 422 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 CDCA3Q99618 268 aaPredicted RBP9.69□□□□□ -0.86
USP54-211ENST00000474929 CRNKL1Q9BZJ0 848 aaKnown RBP9.69□□□□□ -0.86
USP54-211ENST00000474929 SLC38A10Q9HBR0 1119 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 CLEC1BQ9P126 229 aa9.69□□□□□ -0.86
USP54-211ENST00000474929 ADD3Q9UEY8 706 aaKnown RBP9.69□□□□□ -0.86
USP54-211ENST00000474929 ADGRA3Q8IWK6 1321 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 A6NJR5 290 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 GRM6O15303 877 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 CYP2E1P05181 493 aaPredicted RBP9.68□□□□□ -0.86
USP54-211ENST00000474929 CNTN2Q02246 1040 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 GPNMBQ14956 572 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP54-211ENST00000474929 WDR63Q8IWG1 891 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 MIGA1Q8NAN2 632 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 DTWD2Q8NBA8 298 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 MORC4Q8TE76 937 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 SEPT8Q92599 483 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 APBB2Q92870 758 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 IL17RAQ96F46 866 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 ZNF512BQ96KM6 892 aaPredicted RBP9.68□□□□□ -0.86
USP54-211ENST00000474929 NEK1Q96PY6 1258 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 KATNAL1Q9BW62 490 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 IFIH1Q9BYX4 1025 aaKnown RBP9.68□□□□□ -0.86
USP54-211ENST00000474929 WDR11Q9BZH6 1224 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 A1CFQ9NQ94 594 aaKnown RBP9.68□□□□□ -0.86
USP54-211ENST00000474929 MCM9Q9NXL9 1143 aa9.68□□□□□ -0.86
USP54-211ENST00000474929 PA2G4Q9UQ80 394 aaKnown RBP9.68□□□□□ -0.86
USP54-211ENST00000474929 EEF2P13639 858 aaKnown RBP9.67□□□□□ -0.86
USP54-211ENST00000474929 ATXN1P54253 815 aaKnown RBP9.67□□□□□ -0.86
USP54-211ENST00000474929 EEPD1Q7L9B9 569 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 FLCNQ8NFG4 579 aa9.67□□□□□ -0.86
USP54-211ENST00000474929 CLP1Q92989 425 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms