RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 CCDC22O60826 627 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 NAPAP54920 295 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 E2F5Q15329 346 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 VPS39Q96JC1 886 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 UBA2Q9UBT2 640 aaPredicted RBP5.66□□□□□ -1.5
CSMD3-204ENST00000455883 DNAJC12Q9UKB3 198 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 ANKARQ7Z5J8 1434 aa5.66□□□□□ -1.5
CSMD3-204ENST00000455883 TTKP33981 857 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SND1Q7KZF4 910 aaKnown RBP eCLIP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 CFAP36Q96G28 342 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 MROH5Q6ZUA9 1318 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 FOSP01100 380 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SKIDA1Q1XH10 827 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 CCDC105Q8IYK2 499 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 EYA3Q99504 573 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 EXOC6BQ9Y2D4 811 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SPEF2Q9C093 1822 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 PRR23AA6NEV1 266 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SNTNA6NMZ2 147 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF839A8K0R7 811 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 NAA20P61599 178 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 HSP90AA4PQ58FG1 418 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 TMC4Q7Z404 712 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 NEK8Q86SG6 692 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 NEK9Q8TD19 979 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 FOXP1Q9H334 677 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ANKIB1Q9P2G1 1089 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SRRM3A6NNA2 597 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 STK3Q13188 491 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 DCUN1D2Q6PH85 259 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 NFE2L3Q9Y4A8 694 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 RXRGP48443 463 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 C8orf34Q49A92 452 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ZFP91Q96JP5 570 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ARHGEF10LQ9HCE6 1279 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ZBTB40Q9NUA8 1239 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SLC5A4Q9NY91 659 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 SESN1Q9Y6P5 492 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 RUSC2Q8N2Y8 1516 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 UGGT1Q9NYU2 1555 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 KLF18A0A0U1RQI7 1052 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 KANSL1LA0AUZ9 987 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 HSPA1AP0DMV8 641 aaKnown RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 HSPA1BP0DMV9 641 aaKnown RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 TRIM69Q86WT6 500 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 CCDC127Q96BQ5 260 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 ZNF653Q96CK0 615 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 YIPF3Q9GZM5 350 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 UBA5Q9GZZ9 404 aa5.65□□□□□ -1.5
CSMD3-204ENST00000455883 RRP15Q9Y3B9 282 aaKnown RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 EP300Q09472 2414 aaPredicted RBP5.65□□□□□ -1.5
CSMD3-204ENST00000455883 KIF26BQ2KJY2 2108 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 RMDN1Q96DB5 314 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SEL1LQ9UBV2 794 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 RPS6KB1P23443 525 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 GUCY1B3Q02153 619 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 RAPGEF1Q13905 1077 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 RSBN1LQ6PCB5 846 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 LRRC8AQ8IWT6 810 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 POLR3CQ9BUI4 534 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 GCOM2Q9BZD3 368 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 XAB2Q9HCS7 855 aaKnown RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SMG5Q9UPR3 1016 aaKnown RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 PLEKHG2Q9H7P9 1386 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 A2MP01023 1474 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 CA4P22748 312 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 KRT9P35527 623 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 TAP1Q03518 808 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 CYLC2Q14093 348 aaPredicted RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 CEP170Q5SW79 1584 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 C4orf22Q6V702 233 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SEPT8Q92599 483 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SLC26A6Q9BXS9 759 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 F5P12259 2224 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 TNFAIP3P21580 790 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 FANCCQ00597 558 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 ATP2B3Q16720 1220 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 KYAT1Q16773 422 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 DZIP3Q86Y13 1208 aaKnown RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 ZNF579Q8NAF0 562 aaKnown RBP5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SYBUQ9NX95 663 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 STRIP2Q9ULQ0 834 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 SAMM50Q9Y512 469 aa5.65□□□□□ -1.51
CSMD3-204ENST00000455883 FKBP3Q00688 224 aaKnown RBP5.64□□□□□ -1.51
CSMD3-204ENST00000455883 OTUD6AQ7L8S5 288 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 IFNL2Q8IZJ0 200 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 RIOK1Q9BRS2 568 aaKnown RBP5.64□□□□□ -1.51
CSMD3-204ENST00000455883 USP26Q9BXU7 913 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 POLEQ07864 2286 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 BCAR3O75815 825 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 TNFAIP1Q13829 316 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 CMTM5Q96DZ9 223 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 MED14O60244 1454 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 NEO1Q92859 1461 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 DAB2IPQ5VWQ8 1189 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 EFL1Q7Z2Z2 1120 aaKnown RBP5.64□□□□□ -1.51
CSMD3-204ENST00000455883 KRT27Q7Z3Y8 459 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 SESTD1Q86VW0 696 aa5.64□□□□□ -1.51
CSMD3-204ENST00000455883 ACRBPQ8NEB7 543 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms