RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 STAT3P40763 770 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 AKAP17AQ02040 695 aaKnown RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 PLS1Q14651 629 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 TKFCQ3LXA3 575 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CCDC174Q6PII3 467 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 FBXO11Q86XK2 927 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 RIOX2Q8IUF8 465 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CCDC83Q8IWF9 413 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CPXCR1Q8N123 301 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 CMTR1Q8N1G2 835 aaKnown RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 NECAB1Q8N987 351 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 SHCBP1Q8NEM2 672 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 PIGSQ96S52 555 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 LLPHQ9BRT6 129 aaKnown RBP10.12□□□□□ -0.79
SYNE1-214ENST00000454018 AMNQ9BXJ7 453 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 VAT1LQ9HCJ6 419 aa10.12□□□□□ -0.79
SYNE1-214ENST00000454018 ABCB11O95342 1321 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 GPR25O00155 361 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 PRPF3O43395 683 aaKnown RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 FMNL1O95466 1100 aaPredicted RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 MAPK4P31152 587 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 SSRP1Q08945 709 aaKnown RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 ST3GAL1Q11201 340 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 NSUN7Q8NE18 718 aaKnown RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 PHKBQ93100 1093 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 SLC26A6Q9BXS9 759 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 MOV10L1Q9BXT6 1211 aaKnown RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 R3HDMLQ9H3Y0 253 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 MROH8Q9H579 483 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 RAVER2Q9HCJ3 691 aaKnown RBP10.11□□□□□ -0.79
SYNE1-214ENST00000454018 FBXO40Q9UH90 709 aa10.11□□□□□ -0.79
SYNE1-214ENST00000454018 PTPDC1A2A3K4 754 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 DEXIO95424 95 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 SCG2P13521 617 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 GCGRP47871 477 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 SNAP25P60880 206 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 USP46P62068 366 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 HMGN5P82970 282 aaKnown RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 LACTBP83111 547 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 SP3Q02447 781 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 KIF22Q14807 665 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 PFKFB3Q16875 520 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 USH1GQ495M9 461 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 ARSIQ5FYB1 569 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 PPP1R18Q6NYC8 613 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 CCAR1Q8IX12 1150 aaKnown RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 FAM177A1Q8N128 213 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 CHST13Q8NET6 341 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 PIBF1Q8WXW3 757 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 AGBL1Q96MI9 1066 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 ACAD9Q9H845 621 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 RNF146Q9NTX7 359 aa10.1□□□□□ -0.79
SYNE1-214ENST00000454018 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 MAFBQ9Y5Q3 323 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 V9GY48 417 aaPredicted RBP10.1□□□□□ -0.79
SYNE1-214ENST00000454018 SMAPO00193 183 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 PEX10O60683 326 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 PPP1R11O60927 126 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 FKTNO75072 461 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 CTDNEP1O95476 244 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 HSPA1AP0DMV8 641 aaKnown RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 HSPA1BP0DMV9 641 aaKnown RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 ALAS1P13196 640 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 ERCC3P19447 782 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 FCGRTP55899 365 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 Q3C1V9 767 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 HEATR3Q7Z4Q2 680 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 NCAPG2Q86XI2 1143 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 CCDC148Q8NFR7 591 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 SMARCC2Q8TAQ2 1214 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 CCDC12Q8WUD4 166 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 WASF1Q92558 559 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 TSC1Q92574 1164 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 ERO1AQ96HE7 468 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 DCBLD2Q96PD2 775 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 MAF1Q9H063 256 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 PORCNQ9H237 461 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 CWC22Q9HCG8 908 aaKnown RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 HOMER2Q9NSB8 354 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 METRNQ9UJH8 293 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 MRPL11Q9Y3B7 192 aaKnown RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 KIF3AQ9Y496 699 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.09□□□□□ -0.79
SYNE1-214ENST00000454018 PCDHA1Q9Y5I3 950 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 PFASO15067 1338 aa10.09□□□□□ -0.79
SYNE1-214ENST00000454018 hCG_1642624A0A1W2PR95 340 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 TNPO2O14787 897 aaKnown RBP10.08□□□□□ -0.8
SYNE1-214ENST00000454018 GNRH1P01148 92 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 CTCFP49711 727 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-214ENST00000454018 CUL4AQ13619 759 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 BECN1Q14457 450 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 ARHGEF6Q15052 776 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 PKN1Q16512 942 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 WDR78Q5VTH9 848 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 WWC2Q6AWC2 1192 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 GPR142Q7Z601 462 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 TEX2Q8IWB9 1127 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 ZNF296Q8WUU4 475 aaPredicted RBP10.08□□□□□ -0.8
SYNE1-214ENST00000454018 SOCS4Q8WXH5 440 aa10.08□□□□□ -0.8
SYNE1-214ENST00000454018 GPKOWQ92917 476 aaPredicted RBP eCLIP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms