RNA–Protein interactions for RNA: ENST00000448935.6

VIPAS39-203, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,623 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-203ENST00000448935 ISM2Q6H9L7 571 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 CABP7Q86V35 215 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 NLGN2Q8NFZ4 835 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 LPAR1Q92633 364 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 CALML4Q96GE6 196 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 TEPSINQ96N21 525 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 MTMR9Q96QG7 549 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 NUP88Q99567 741 aaPredicted RBP11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 OCEL1Q9H607 264 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 HACL1Q9UJ83 578 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 MYH7BA7E2Y1 1941 aa11.92□□□□□ -0.5
VIPAS39-203ENST00000448935 A0A087WWV3 80 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 SPDYE3A6NKU9 549 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 PHF20L1A8MW92 1017 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 CBFA2T2O43439 604 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 SLC26A4O43511 780 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 MARCH6O60337 910 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 IRX5P78411 483 aaPredicted RBP11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 AMPD3Q01432 767 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 GRAMD1CQ8IYS0 662 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 SPICE1Q8N0Z3 855 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 GPC2Q8N158 579 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 IGSF22Q8N9C0 903 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 ENOX1Q8TC92 643 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 ACER1Q8TDN7 264 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 CCDC47Q96A33 483 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 FEZ1Q99689 392 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 ANO3Q9BYT9 981 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 DDX25Q9UHL0 483 aaKnown RBP11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 PPP2R3BQ9Y5P8 575 aa11.91□□□□□ -0.5
VIPAS39-203ENST00000448935 SHTN1A0MZ66 631 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 PIK3CDO00329 1044 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 TECP42680 631 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 TXKP42681 527 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 NCAPHQ15003 741 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 KARSQ15046 597 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 TBC1D10BQ4KMP7 808 aaPredicted RBP11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 SH3D19Q5HYK7 790 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 FAM83BQ5T0W9 1011 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 SAMD7Q7Z3H4 446 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 ZNF341Q9BYN7 854 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 LRRC27Q9C0I9 530 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 DEFB129Q9H1M3 183 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 RANBP17Q9H2T7 1088 aaKnown RBP11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 EHMT1Q9H9B1 1298 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 STK17AQ9UEE5 414 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 LRWD1Q9UFC0 647 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 PNMA2Q9UL42 364 aa11.9□□□□□ -0.5
VIPAS39-203ENST00000448935 CYP3A7-CYP3A51PA0A087WV96 503 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 MEIS2O14770 477 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 WDR46O15213 610 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 ZNF500O60304 480 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 TDP2O95551 362 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 CYP3A7P24462 503 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 HOXA7P31268 230 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 MCM6Q14566 821 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USH1GQ495M9 461 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 KRT79Q5XKE5 535 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 ARHGAP27Q6ZUM4 889 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 CDAN1Q8IWY9 1227 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 SLFN12Q8IYM2 578 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 SPC24Q8NBT2 197 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 CDK5RAP3Q96JB5 506 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 REPIN1Q9BWE0 567 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 KIAA1683Q9H0B3 1180 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 AS3MTQ9HBK9 375 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 RRAGDQ9NQL2 400 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 MRPL11Q9Y3B7 192 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 DOCK1Q14185 1865 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 ABCB11O95342 1321 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 ZNF541Q9H0D2 1346 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L15C9J2P7 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L13C9JLJ4 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L11C9JVI0 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L18D6R9N7 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L22D6RA61 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L17D6RBQ6 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L19D6RCP7 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L20D6RJB6 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 TBX3O15119 743 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 GALR2O43603 387 aaPredicted RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 EVI5O60447 810 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 EGFRP00533 1210 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 RPN1P04843 607 aaKnown RBP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 BMP6P22004 513 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 YY1P25490 414 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 PPP1R2P41236 205 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 PRELPP51888 382 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP14P54578 494 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L24Q0WX57 530 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 KCNB1Q14721 858 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 USP17L6PQ6QN14 398 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 KBTBD4Q9NVX7 518 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 GPRC5DQ9NZD1 345 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 IMPACTQ9P2X3 320 aa11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.89□□□□□ -0.51
VIPAS39-203ENST00000448935 SBF1O95248 1867 aa11.88□□□□□ -0.51
VIPAS39-203ENST00000448935 SLC37A4O43826 429 aa11.88□□□□□ -0.51
VIPAS39-203ENST00000448935 FDX1P10109 184 aa11.88□□□□□ -0.51
VIPAS39-203ENST00000448935 CDC25AP30304 524 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms