RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 PRR12Q9ULL5 1215 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.14□□□□□ -0.95
VPS50-204ENST00000438395 RAD50Q92878 1312 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 PTPDC1A2A3K4 754 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 NMT2O60551 498 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 TIMP1P01033 207 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 ICAM1P05362 532 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 TOP1P11387 765 aaKnown RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 PDE1AP54750 535 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 SNAP25P60880 206 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 PUS10Q3MIT2 529 aaKnown RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 KMT5BQ4FZB7 885 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 BRDTQ58F21 947 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 SYDE2Q5VT97 1194 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 MFSD5Q6N075 450 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 PSRC1Q6PGN9 363 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 CXCL17Q6UXB2 119 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 FAM133AQ8N9E0 248 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 MYLIPQ8WY64 445 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 PPP1R12CQ9BZL4 782 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 SEMA6BQ9H3T3 888 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 RNF41Q9H4P4 317 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 ANAPC4Q9UJX5 808 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 TBX21Q9UL17 535 aa9.13□□□□□ -0.95
VPS50-204ENST00000438395 GREB1LQ9C091 1923 aaPredicted RBP9.13□□□□□ -0.95
VPS50-204ENST00000438395 COL11A1P12107 1806 aaPredicted RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 B4DLN1 442 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 DYNC1LI2O43237 492 aaPredicted RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 PCP11498 1178 aaKnown RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 ITGB8P26012 769 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 SLC16A2P36021 539 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 MRPL12P52815 198 aaKnown RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 EPHB4P54760 987 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 BEX3Q00994 111 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 HDAC1Q13547 482 aaPredicted RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 ALX1Q15699 326 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 MCMDC2Q4G0Z9 681 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 VPS53Q5VIR6 699 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 IQSEC1Q6DN90 963 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 CCSAPQ6IQ19 270 aaPredicted RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 MFSD6Q6ZSS7 791 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 EEPD1Q7L9B9 569 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 TICAM2Q86XR7 235 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 FBXO16Q8IX29 292 aaPredicted RBP9.12□□□□□ -0.95
VPS50-204ENST00000438395 RILPL2Q969X0 211 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 FGD4Q96M96 766 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 CRBNQ96SW2 442 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 PRR14Q9BWN1 585 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 SEZ6LQ9BYH1 1024 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 PRKD2Q9BZL6 878 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 HIPK3Q9H422 1215 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 VTA1Q9NP79 307 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 GPCPD1Q9NPB8 672 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 DIAPH3Q9NSV4 1193 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 CYP39A1Q9NYL5 469 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 LTBP2Q14767 1821 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 PARP14Q460N5 1801 aa9.12□□□□□ -0.95
VPS50-204ENST00000438395 ZNF536O15090 1300 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 FRMPD2Q68DX3 1309 aaPredicted RBP9.11□□□□□ -0.95
VPS50-204ENST00000438395 CCDC171Q6TFL3 1326 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 A0A0D9SFI3 127 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 DDX11L8A8MPP1 907 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 ADCY6O43306 1168 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 CSF2RAP15509 400 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 CALML3P27482 149 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 HAND2P61296 217 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 PDE4DQ08499 809 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 ITGA7Q13683 1181 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 AAMPQ13685 434 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 MUM1L1Q5H9M0 696 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 KIAA1211Q6ZU35 1233 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 RASGRP2Q7LDG7 609 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 RDH13Q8NBN7 331 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 ESR2Q92731 530 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 TIFAQ96CG3 184 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 FAM227BQ96M60 508 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 GAS2L1Q99501 681 aaPredicted RBP9.11□□□□□ -0.95
VPS50-204ENST00000438395 LNPKQ9C0E8 428 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 RWDD1Q9H446 243 aaPredicted RBP9.11□□□□□ -0.95
VPS50-204ENST00000438395 INCENPQ9NQS7 918 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 IL17RBQ9NRM6 502 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 MSRAQ9UJ68 235 aa9.11□□□□□ -0.95
VPS50-204ENST00000438395 ZMYM6O95789 1325 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 LOC102724159A0A0B4J2E5 919 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 FOXP2O15409 715 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 DHX16O60231 1041 aaKnown RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 FGAP02671 866 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 SMPD1P17405 629 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 CYP2C18P33260 490 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 CPT1AP50416 773 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 CDK7P50613 346 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 NMIQ13287 307 aaPredicted RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 BAATQ14032 418 aaPredicted RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 PPP2R5BQ15173 497 aa9.1□□□□□ -0.95
VPS50-204ENST00000438395 PWP2Q15269 919 aaKnown RBP9.1□□□□□ -0.95
VPS50-204ENST00000438395 RAB30Q15771 203 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms