RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TXNDC9O14530 226 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 PFKFB1P16118 471 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 TRIM58Q8NG06 486 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 NRBP2Q9NSY0 501 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 ATF2P15336 505 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 SLITRK6Q9H5Y7 841 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 SAR1BQ9Y6B6 198 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 STX2P32856 288 aa13.15□□□□□ -0.3
CCDC88A-207ENST00000436346 ARHGAP42A6NI28 874 aa13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 INO80B-WBP1J3KQ70 363 aa13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 HEXIM1O94992 359 aaKnown RBP13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 CROCCP2Q86T23 111 aa13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 CACTINQ8WUQ7 758 aaKnown RBP13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 INO80BQ9C086 356 aaPredicted RBP13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 SLC38A10Q9HBR0 1119 aa13.15□□□□□ -0.31
CCDC88A-207ENST00000436346 PTGDRQ13258 359 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 OLA1Q9NTK5 396 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 ERFEQ4G0M1 354 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 FAM173BQ6P4H8 233 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 FANCBQ8NB91 859 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 BZW2Q9Y6E2 419 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 TTC30BQ8N4P2 665 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 GANCQ8TET4 914 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 DESI2Q9BSY9 194 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 STK38LQ9Y2H1 464 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 HSPD1P10809 573 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 MAGEA1P43355 309 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 RAPH1Q70E73 1250 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 PRDM15P57071 1507 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 KRT27Q7Z3Y8 459 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 VSIG1Q86XK7 387 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 ERO1AQ96HE7 468 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 LMCD1Q9NZU5 365 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 TMEM94Q12767 1356 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 CLGNO14967 610 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 AMNQ9BXJ7 453 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 PNMA3Q9UL41 463 aa13.14□□□□□ -0.31
CCDC88A-207ENST00000436346 POLR2BP30876 1174 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ARPP19P56211 112 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ADAM9Q13443 819 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 MMEL1Q495T6 779 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 LRRC24Q50LG9 513 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF341Q9BYN7 854 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 MAGED2Q9UNF1 606 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 C10orf67Q8IYJ2 551 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ANKRD42Q8N9B4 389 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 KCNQ4P56696 695 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 EEPD1Q7L9B9 569 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 TYW1Q9NV66 732 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 CNTRLQ7Z7A1 2325 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 SOS2Q07890 1332 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 PHKA1P46020 1223 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 KMT5AQ9NQR1 393 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 FNDC3AQ9Y2H6 1198 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ABCC12Q96J65 1359 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 LRRN2O75325 713 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 FAM114A2Q9NRY5 505 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ANKRD20A3Q5VUR7 823 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 EEF2KMTQ96G04 330 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 BAG5Q9UL15 447 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 MIGA2Q7L4E1 593 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 KCTD6Q8NC69 237 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF653Q96CK0 615 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 FAM182BQ5T319 152 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 HVCN1Q96D96 273 aa13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 XPO4Q9C0E2 1151 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-207ENST00000436346 CDK12Q9NYV4 1490 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 XPOTO43592 962 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 SDCCAG3Q96C92 435 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 SLC12A6Q9UHW9 1150 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ASAP1Q9ULH1 1129 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 H7C0C1 242 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 FGAP02671 866 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ATP5OP48047 213 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 EXOC3L4Q17RC7 722 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 LMNTD2Q8IXW0 634 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PCP11498 1178 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 KIF24Q5T7B8 1368 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 RASSF2P50749 326 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 SESN3P58005 492 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 RFX6Q8HWS3 928 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 SERTAD1Q9UHV2 236 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PASKQ96RG2 1323 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ARHGAP4P98171 946 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 GPATCH4Q5T3I0 446 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 USP17L3A6NCW0 530 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 USP17L4A6NCW7 530 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PCCAP05165 728 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PMLP29590 882 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ZNF449Q6P9G9 518 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ELMSAN1Q6PJG2 1045 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 USP17L1Q7RTZ2 530 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 CPSF3Q9UKF6 684 aaKnown RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 ABCA6Q8N139 1617 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PSDA5PKW4 1024 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 RNF8O76064 485 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 PPP2R5EQ16537 467 aa13.12□□□□□ -0.31
CCDC88A-207ENST00000436346 TROVE2P10155 538 aaKnown RBP eCLIP13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 SLC12A1Q13621 1099 aa13.11□□□□□ -0.31
CCDC88A-207ENST00000436346 MAGEF1Q9HAY2 307 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms