RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 POU5F1Q01860 360 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 CUL1Q13616 776 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 LRIG3Q6UXM1 1119 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 MAATS1Q7Z4T9 603 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 MTMR8Q96EF0 704 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 RRP36Q96EU6 259 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 PAGE5Q96GU1 130 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 ESF1Q9H501 851 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 RNMTO43148 476 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 MMP13P45452 471 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 SARNPP82979 210 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 TROAPQ12815 778 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 LBRQ14739 615 aaKnown RBP5.69□□□□□ -1.5
RIF1-203ENST00000428287 ANKRD20A2Q5SQ80 823 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 ANKRD20A1Q5TYW2 823 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 ANKRD20A3Q5VUR7 823 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 ASRGL1Q7L266 308 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 NOD2Q9HC29 1040 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 PCDHB6Q9Y5E3 794 aa5.69□□□□□ -1.5
RIF1-203ENST00000428287 FER1L6Q2WGJ9 1857 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 EYA2O00167 538 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 RHOBTB3O94955 611 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 FMNL1O95466 1100 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 ZBTB48P10074 688 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 EZH2Q15910 746 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 ZNF658Q5TYW1 1059 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 HGSNATQ68CP4 663 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 CACNA2D3Q8IZS8 1091 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ANKS4BQ8N8V4 417 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 CSRNP2Q9H175 543 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.68□□□□□ -1.5
RIF1-203ENST00000428287 GTPBP6O43824 516 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 PPP1R2P41236 205 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 PRCPP42785 496 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ZNF844Q08AG5 666 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 SLFN11Q7Z7L1 901 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 DUSP9Q99956 384 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 DUOX1Q9NRD9 1551 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 PES1O00541 588 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 NUDT17P0C025 328 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 NEFHP12036 1026 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 CCT6AP40227 531 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 SHISA4Q96DD7 197 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 TMBIM4Q9HC24 238 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 KCNJ18B7U540 433 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 KLRC4O43908 158 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 HSF2BPO75031 334 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 PAK1Q13153 545 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 KCNJ12Q14500 433 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 COPS6Q7L5N1 327 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 KRT26Q7Z3Y9 468 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 MB21D1Q8N884 522 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 BAP1Q92560 729 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 EPSTI1Q96J88 318 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 TMEM109Q9BVC6 243 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 NUCKS1Q9H1E3 243 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 ISCUQ9H1K1 167 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ARHGEF3Q9NR81 526 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 HYOU1Q9Y4L1 999 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 TACC1O75410 805 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 DEXIO95424 95 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ATP1A2P50993 1020 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 CAPRIN2Q6IMN6 1127 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 PGM2Q96G03 612 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 PLCD4Q9BRC7 762 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 TMX4Q9H1E5 349 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 CNOT10Q9H9A5 744 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 TNRC6CQ9HCJ0 1690 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 PARP1P09874 1014 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 FAM153BP0C7A2 387 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ZNF568Q3ZCX4 644 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 FAM153CQ494X1 144 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 SYN2Q92777 582 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 DHTKD1Q96HY7 919 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 NUP88Q99567 741 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 TUBGCP2Q9BSJ2 902 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 VPS16Q9H269 839 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 ETAA1Q9NY74 926 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 FAM153AQ9UHL3 310 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 RPL26L1Q9UNX3 145 aaKnown RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 TRIP12Q14669 1992 aaPredicted RBP5.68□□□□□ -1.5
RIF1-203ENST00000428287 DOCK1Q14185 1865 aa5.68□□□□□ -1.5
RIF1-203ENST00000428287 GPR75-ASB3A0A0A6YYF3 556 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 GRID2IPA4D2P6 1211 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 TRIM37O94972 964 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 IDEP14735 1019 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 MAGEA8P43361 318 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 EIF3BP55884 814 aaKnown RBP5.67□□□□□ -1.5
RIF1-203ENST00000428287 ELF3P78545 371 aaPredicted RBP5.67□□□□□ -1.5
RIF1-203ENST00000428287 TSR1Q2NL82 804 aaKnown RBP5.67□□□□□ -1.5
RIF1-203ENST00000428287 CNNM4Q6P4Q7 775 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 GRAMD1CQ8IYS0 662 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 RBM12Q9NTZ6 932 aaKnown RBP5.67□□□□□ -1.5
RIF1-203ENST00000428287 SIK3Q9Y2K2 1263 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 ASB3Q9Y575 518 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 SNUPNO95149 360 aaKnown RBP5.67□□□□□ -1.5
RIF1-203ENST00000428287 ITIH4Q14624 930 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 AP1ARQ63HQ0 302 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 KLHL10Q6JEL2 608 aa5.67□□□□□ -1.5
RIF1-203ENST00000428287 TBC1D16Q8TBP0 767 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms