RNA–Protein interactions for RNA: ENST00000416159.5

PDLIM2-208, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5

Gene PDLIM2, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-208ENST00000416159 TRAF1Q13077 416 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 GRM4Q14833 912 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 WTAPQ15007 396 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 FAM161BQ96MY7 647 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 RMDN3Q96TC7 470 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.46■□□□□ 0.871e-6■■■■□ 22.3
PDLIM2-208ENST00000416159 MTG1Q9BT17 334 aaPredicted RBP20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 HIPK3Q9H422 1215 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 MAP3K20Q9NYL2 800 aaKnown RBP20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 COL20A1Q9P218 1284 aa20.46■□□□□ 0.87
PDLIM2-208ENST00000416159 A6NJR5 290 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 B4GALT4O60513 344 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 CYP2C18P33260 490 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 STXBP2Q15833 593 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 TMEM240Q5SV17 173 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 ARHGEF16Q5VV41 709 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 C16orf59Q7L2K0 433 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 SAMD3Q8N6K7 520 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 COPS5Q92905 334 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 GUCD1Q96NT3 240 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 TRPV6Q9H1D0 765 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 SEMA6BQ9H3T3 888 aa20.45■□□□□ 0.86
PDLIM2-208ENST00000416159 TMEM265A0A087WTH1 108 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 CFBP00751 764 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 SUPT20HL2P0C7V6 817 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 GHRHRQ02643 423 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 CCDC62Q6P9F0 684 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 PSRC1Q6PGN9 363 aaPredicted RBP20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 STOX1Q6ZVD7 989 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 ALDH8A1Q9H2A2 487 aaPredicted RBP20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 RIOX1Q9H6W3 641 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 IL23AQ9NPF7 189 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 PCDHA1Q9Y5I3 950 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 RBM8AQ9Y5S9 174 aaKnown RBP20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 TAF6LQ9Y6J9 622 aa20.44■□□□□ 0.86
PDLIM2-208ENST00000416159 ARIH2O95376 493 aa20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 HSD17B4P51659 736 aa20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 TMEM67Q5HYA8 995 aa20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 SEPT14Q6ZU15 432 aa20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 ZNF365Q70YC5 407 aa20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 NOC4LQ9BVI4 516 aaKnown RBP20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 BAZ2BQ9UIF8 2168 aaKnown RBP20.43■□□□□ 0.86
PDLIM2-208ENST00000416159 EIF3JO75822 258 aaKnown RBP20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 GH1P01241 217 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 NR3C2P08235 984 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 ACRP10323 421 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 TROAPQ12815 778 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 CHST3Q7LGC8 479 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 CATIPQ7Z7H3 387 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 MB21D2Q8IYB1 491 aaPredicted RBP20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 IGDCC4Q8TDY8 1250 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 MTA3Q9BTC8 594 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 SENP2Q9HC62 589 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 PXMP2Q9NR77 195 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 SCN10AQ9Y5Y9 1956 aa20.42■□□□□ 0.86
PDLIM2-208ENST00000416159 OPLAHO14841 1288 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 PPP1R11O60927 126 aaPredicted RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 FGBP02675 491 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 EIF2AK2P19525 551 aaKnown RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 ANTXR2P58335 489 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 PTPN11Q06124 597 aaPredicted RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 NBPF20Q3BBV1 942 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 RASIP1Q5U651 963 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 NFRKBQ6P4R8 1299 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 HOMER1Q86YM7 354 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 RPUSD2Q8IZ73 545 aaKnown RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 PIGSQ96S52 555 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 CDX2Q99626 313 aaPredicted RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 MTIF3Q9H2K0 278 aaKnown RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 TTYH1Q9H313 450 aaPredicted RBP20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 KIAA1217Q5T5P2 1943 aa20.41■□□□□ 0.86
PDLIM2-208ENST00000416159 PNMA6FA0A0J9YX94 578 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 CCL23P55773 120 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 LY6KQ17RY6 165 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 SLC35G1Q2M3R5 365 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 UMODL1Q5DID0 1318 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 FAM47CQ5HY64 1035 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 CASC1Q6TDU7 716 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 HERVK_113Q902F9 699 aa20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 TRMT13Q9NUP7 481 aaKnown RBP20.4■□□□□ 0.86
PDLIM2-208ENST00000416159 GCOM1H8Y6P7 765 aaPredicted RBP20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 CYTH3O43739 400 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 POLR2MP0CAP2 368 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 DNAJB2P25686 324 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 ARHGAP1Q07960 439 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 TMTC2Q8N394 836 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 AFG1LQ8WV93 481 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 MAP3K14Q99558 947 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 PDCD2LQ9BRP1 358 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 ESYT1Q9BSJ8 1104 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 LSG1Q9H089 658 aaKnown RBP20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 WNT8AQ9H1J5 351 aa20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 DDX41Q9UJV9 622 aaKnown RBP20.39■□□□□ 0.85
PDLIM2-208ENST00000416159 MMP3P08254 477 aa20.38■□□□□ 0.85
PDLIM2-208ENST00000416159 CASTP20810 708 aaKnown RBP20.38■□□□□ 0.85
PDLIM2-208ENST00000416159 KCNV1Q6PIU1 500 aa20.38■□□□□ 0.85
PDLIM2-208ENST00000416159 DDAH1O94760 285 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 CYP2C9P11712 490 aa20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 MYCLP12524 364 aaPredicted RBP20.37■□□□□ 0.85
PDLIM2-208ENST00000416159 HOXA13P31271 388 aaPredicted RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms