RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 ODR4Q5SWX8 454 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 USP17L2Q6R6M4 530 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 CCDC125Q86Z20 511 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ENOX1Q8TC92 643 aaKnown RBP13.17□□□□□ -0.3
PTPRF-205ENST00000414879 MAP3K14Q99558 947 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 TMEM47Q9BQJ4 181 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 MXD3Q9BW11 206 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ANO3Q9BYT9 981 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ZNF215Q9UL58 517 aaPredicted RBP13.17□□□□□ -0.3
PTPRF-205ENST00000414879 ZNRF3Q9ULT6 936 aa13.17□□□□□ -0.3
PTPRF-205ENST00000414879 FERP16591 822 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 CFAP221Q4G0U5 840 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 DYNLL2Q96FJ2 89 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 SLF1Q9BQI6 1058 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 TBC1D22BQ9NU19 505 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 AGTPBP1Q9UPW5 1226 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PCDHA5Q9Y5H7 936 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 GSG1L2A8MUP6 293 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 KDM6AO15550 1401 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 DCUN1D2Q6PH85 259 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 IFT20Q8IY31 132 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 SLC10A4Q96EP9 437 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PARP2Q9UGN5 583 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 COMMD10Q9Y6G5 202 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PSMC2P35998 433 aaKnown RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 LRRC63Q05C16 580 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PPP1R14CQ8TAE6 165 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 TBC1D16Q8TBP0 767 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 P2RX5Q93086 422 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PPP1R9BQ96SB3 815 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 TXNDC16Q9P2K2 825 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 PSDA5PKW4 1024 aaPredicted RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 RPS12P25398 132 aaKnown RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 RPS6KA1Q15418 735 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 DPH6Q7L8W6 267 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 HDXQ7Z353 690 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 IFIH1Q9BYX4 1025 aaKnown RBP13.16□□□□□ -0.3
PTPRF-205ENST00000414879 IFT122Q9HBG6 1241 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 TBC1D7Q9P0N9 293 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 CALCOCO1Q9P1Z2 691 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 RWDD2AQ9UIY3 292 aa13.16□□□□□ -0.3
PTPRF-205ENST00000414879 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-205ENST00000414879 SMARCA1P28370 1054 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 MYO1AQ9UBC5 1043 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 TOB2Q14106 344 aaPredicted RBP13.15□□□□□ -0.3
PTPRF-205ENST00000414879 ZNF365Q70YC5 407 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 RRAGAQ7L523 313 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 C2orf69Q8N8R5 385 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 LSM14BQ9BX40 385 aaKnown RBP13.15□□□□□ -0.3
PTPRF-205ENST00000414879 THAP9Q9H5L6 903 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 LPXNO60711 386 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 GH2P01242 217 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 C8orf74Q6P047 294 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 MAEAQ7L5Y9 396 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 TBC1D10CQ8IV04 446 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 KCTD17Q8N5Z5 321 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 NSUN4Q96CB9 384 aaKnown RBP13.15□□□□□ -0.3
PTPRF-205ENST00000414879 MAN2A1Q16706 1144 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 C12orf60Q5U649 245 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 ZNF354CQ86Y25 554 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 TEX2Q8IWB9 1127 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 LY9Q9HBG7 655 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 SPON1Q9HCB6 807 aa13.15□□□□□ -0.3
PTPRF-205ENST00000414879 UTP11Q9Y3A2 253 aaKnown RBP13.15□□□□□ -0.3
PTPRF-205ENST00000414879 PTPREP23469 700 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CCNE1P24864 410 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 PDIA6Q15084 440 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 WHAMMP3Q1A5X7 153 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 LINC00116Q8NCU8 138 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 GTF3C2Q8WUA4 911 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-205ENST00000414879 USP17L10C9JJH3 530 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CD19P15391 556 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 COPB1P53618 953 aaKnown RBP13.14□□□□□ -0.31
PTPRF-205ENST00000414879 FBXO33Q7Z6M2 555 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CACTINQ8WUQ7 758 aaKnown RBP13.14□□□□□ -0.31
PTPRF-205ENST00000414879 TCP11Q8WWU5 503 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 RUNDC3BQ96NL0 473 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CLIC6Q96NY7 704 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 SPZ1Q9BXG8 430 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 FAM204AQ9H8W3 233 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CD2APQ9Y5K6 639 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 TMEM191BP0C7N4 346 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 ALDH3A1P30838 453 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 SFNP31947 248 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 MFAP3P55082 362 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 SPICE1Q8N0Z3 855 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 METTL13Q8N6R0 699 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 ENAHQ8N8S7 591 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-205ENST00000414879 STAMQ92783 540 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 AMFRQ9UKV5 643 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 GBP1P32455 592 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 GJC1P36383 396 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 CYP2J2P51589 502 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 KRT76Q01546 638 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 C10orf76Q5T2E6 689 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 SLFN12LQ6IEE8 588 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 PEX26Q7Z412 305 aa13.14□□□□□ -0.31
PTPRF-205ENST00000414879 PRPF38AQ8NAV1 312 aaKnown RBP13.14□□□□□ -0.31
PTPRF-205ENST00000414879 RBM46Q8TBY0 533 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms