RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SND1Q7KZF4 910 aaKnown RBP eCLIP8.05□□□□□ -1.12
SCN9A-202ENST00000409435 ENGASEQ8NFI3 743 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 GSDMBQ8TAX9 411 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 GCOM2Q9BZD3 368 aaPredicted RBP8.05□□□□□ -1.12
SCN9A-202ENST00000409435 HOXA2O43364 376 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 MYCT1Q8N699 235 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 XPNPEP3Q9NQH7 507 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 TRIM35Q9UPQ4 493 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 UBN2Q6ZU65 1347 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 ZC3H4Q9UPT8 1303 aaKnown RBP8.05□□□□□ -1.12
SCN9A-202ENST00000409435 DEXIO95424 95 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 GAS8O95995 478 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 GNRH1P01148 92 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 ADORA1P30542 326 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 GBP1P32455 592 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 HLTFQ14527 1009 aaKnown RBP eCLIP8.05□□□□□ -1.126e-7■■■□□ 14.9
SCN9A-202ENST00000409435 SLMAPQ14BN4 828 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 RUFY3Q7L099 469 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 CTNNBL1Q8WYA6 563 aaPredicted RBP8.05□□□□□ -1.12
SCN9A-202ENST00000409435 C16orf45Q96MC5 204 aaPredicted RBP8.05□□□□□ -1.12
SCN9A-202ENST00000409435 MXD3Q9BW11 206 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 ABCB11O95342 1321 aa8.05□□□□□ -1.12
SCN9A-202ENST00000409435 INTS5Q6P9B9 1019 aaKnown RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 SV2BQ7L1I2 683 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 MORC4Q8TE76 937 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 PRPF31Q8WWY3 499 aaKnown RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 STMN2Q93045 179 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 IRAK4Q9NWZ3 460 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 GSDMDP57764 484 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 NKX1-1Q15270 411 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 DGKDQ16760 1214 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CCDC38Q502W7 563 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CEP85Q6P2H3 762 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 B4GALNT4Q76KP1 1039 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 LRRC43Q8N309 656 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 HAUS7Q99871 368 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 STMN4Q9H169 189 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 IQGAP3Q86VI3 1631 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 IRS2Q9Y4H2 1338 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 MGEA5O60502 916 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 PPATQ06203 517 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 BEND3Q5T5X7 828 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 RSRC2Q7L4I2 434 aaKnown RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 SNX25Q9H3E2 840 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 TTC12Q9H892 705 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 SLIT1O75093 1534 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CAPN9O14815 690 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 PAK2Q13177 524 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 UBE3CQ15386 1083 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CHST13Q8NET6 341 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 MKL2Q9ULH7 1088 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 LIMCH1Q9UPQ0 1083 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 KDM6AO15550 1401 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 SPHKAPQ2M3C7 1700 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 KRT10P13645 584 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 ALDH7A1P49419 539 aaKnown RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 HDLBPQ00341 1268 aaKnown RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CDC42EP1Q00587 391 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CDC37Q16543 378 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 NBPF9Q3BBW0 867 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 CEP135Q66GS9 1140 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 KRBA2Q6ZNG9 492 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 ZNF34Q8IZ26 560 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 PANK2Q9BZ23 570 aa8.04□□□□□ -1.12
SCN9A-202ENST00000409435 ZMYND8Q9ULU4 1186 aaPredicted RBP8.04□□□□□ -1.12
SCN9A-202ENST00000409435 KIDINS220Q9ULH0 1771 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 TTC36A6NLP5 189 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 TRAPPC3O43617 180 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 GABPB1Q06547 395 aaPredicted RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 ARHGAP15Q53QZ3 475 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 NBPF12Q5TAG4 269 aaPredicted RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 RYBPQ8N488 228 aaPredicted RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 SH3TC2Q8TF17 1288 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 TMEM169Q96HH4 297 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 GPR108Q9NPR9 543 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 SLC12A6Q9UHW9 1150 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 TMEM191BP0C7N4 346 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 KRT5P13647 590 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 ZNF18P17022 549 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 PDE1AP54750 535 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 AMPD2Q01433 879 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 CKAP4Q07065 602 aaKnown RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 PPIL2Q13356 520 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 MTERF2Q49AM1 385 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 CCDC92Q53HC0 331 aaPredicted RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 PIK3AP1Q6ZUJ8 805 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 SREK1Q8WXA9 508 aaKnown RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 USP6NLQ92738 828 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 ATP6V0A4Q9HBG4 840 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 SLC4A7Q9Y6M7 1214 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 RGS12O14924 1447 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 CLTCL1P53675 1640 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 TNNI1P19237 187 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 SNW1Q13573 536 aaKnown RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 CACTINQ8WUQ7 758 aaKnown RBP8.03□□□□□ -1.12
SCN9A-202ENST00000409435 NLRP4Q96MN2 994 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 IKBKGQ9Y6K9 419 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 C17orf102A2RUQ5 167 aa8.03□□□□□ -1.12
SCN9A-202ENST00000409435 RLBP1P12271 317 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms