RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 AKAP11Q9UKA4 1901 aa14.38□□□□□ -0.11
PTPRN-202ENST00000409251 CKAP4Q07065 602 aaKnown RBP14.38□□□□□ -0.11
PTPRN-202ENST00000409251 PACSIN2Q9UNF0 486 aaPredicted RBP14.38□□□□□ -0.11
PTPRN-202ENST00000409251 NRAPQ86VF7 1730 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 ADAMTS3O15072 1205 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 PLEKP08567 350 aaPredicted RBP14.37□□□□□ -0.11
PTPRN-202ENST00000409251 TBC1D8BQ0IIM8 1120 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 PAK1Q13153 545 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 CUL4BQ13620 913 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 CCDC178Q5BJE1 867 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 UBA5Q9GZZ9 404 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 COL22A1Q8NFW1 1626 aaPredicted RBP14.37□□□□□ -0.11
PTPRN-202ENST00000409251 EIF3HO15372 352 aaKnown RBP eCLIP14.37□□□□□ -0.11
PTPRN-202ENST00000409251 OPA1O60313 960 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 MCM3P25205 808 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 TOB1P50616 345 aaPredicted RBP14.37□□□□□ -0.11
PTPRN-202ENST00000409251 PAGE5Q96GU1 130 aa14.37□□□□□ -0.11
PTPRN-202ENST00000409251 NAA15Q9BXJ9 866 aaKnown RBP14.37□□□□□ -0.11
PTPRN-202ENST00000409251 HDLBPQ00341 1268 aaKnown RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 NTRK3Q16288 839 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 C2CD5Q86YS7 1000 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 TSEN2Q8NCE0 465 aaKnown RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 MAP3K14Q99558 947 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 GGT7Q9UJ14 662 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 BAG3O95817 575 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 ARHGAP25P42331 645 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 SHROOM1Q2M3G4 852 aaPredicted RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 EARS2Q5JPH6 523 aaKnown RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 LRCH2Q5VUJ6 765 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 WDR66Q8TBY9 1149 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 VEZTQ9HBM0 779 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 EPB41L5Q9HCM4 733 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 TLDC2A0PJX2 215 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 POTEAQ6S8J7 498 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 PIK3AP1Q6ZUJ8 805 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 LRRC47Q8N1G4 583 aaKnown RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 UHMK1Q8TAS1 419 aaKnown RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 MYH3P11055 1940 aa14.36□□□□□ -0.11
PTPRN-202ENST00000409251 FRMPD2Q68DX3 1309 aaPredicted RBP14.36□□□□□ -0.11
PTPRN-202ENST00000409251 RCCD1A6NED2 376 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 C21orf2O43822 256 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 NAIF1Q69YI7 327 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CCNI2Q6ZMN8 369 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 AMOTL1Q8IY63 956 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 RNPC3Q96LT9 517 aaKnown RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 FBXO2Q9UK22 296 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 PNPLA7Q6ZV29 1317 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CYLC1P35663 651 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 VAV2P52735 878 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CCDC40Q4G0X9 1142 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 RILPL1Q5EBL4 403 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 USP17L2Q6R6M4 530 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 AGPSO00116 658 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 PRPF6O94906 941 aaKnown RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CLTAP09496 248 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 NLRP5P59047 1200 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 B4GALNT4Q76KP1 1039 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 HEATR3Q7Z4Q2 680 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CRACR2BQ8N4Y2 399 aaPredicted RBP14.35□□□□□ -0.11
PTPRN-202ENST00000409251 TCP11Q8WWU5 503 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 GOPCQ9HD26 462 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 HAUS2Q9NVX0 235 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 CEP131Q9UPN4 1083 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 LEMD3Q9Y2U8 911 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 BTAF1O14981 1849 aa14.35□□□□□ -0.11
PTPRN-202ENST00000409251 PTPREP23469 700 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 TMOD1P28289 359 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 PTGDRQ13258 359 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 ALX1Q15699 326 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 SPTY2D1Q68D10 685 aaPredicted RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 IQCEQ6IPM2 695 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 KANK3Q6NY19 840 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 THOC1Q96FV9 657 aaKnown RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 NLRC4Q9NPP4 1024 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 BAZ2AQ9UIF9 1905 aaKnown RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 WNT7AO00755 349 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 UPP2O95045 317 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 KIF4AO95239 1232 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 CPLX4Q7Z7G2 160 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 CNPY4Q8N129 248 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 CEP89Q96ST8 783 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 IFIH1Q9BYX4 1025 aaKnown RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 HAUS4Q9H6D7 363 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 FAM184BQ9ULE4 1060 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 PP2D1A8MPX8 630 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 FTCDO95954 541 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 EZRP15311 586 aaKnown RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 GCKP35557 465 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 STAT6P42226 847 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 PSEN1P49768 467 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 NEDD9Q14511 834 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 SRBD1Q8N5C6 995 aaKnown RBP14.34□□□□□ -0.11
PTPRN-202ENST00000409251 KLC4Q9NSK0 619 aa14.34□□□□□ -0.11
PTPRN-202ENST00000409251 ONECUT3O60422 494 aaPredicted RBP14.33□□□□□ -0.11
PTPRN-202ENST00000409251 TACC1O75410 805 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 PARP1P09874 1014 aaKnown RBP14.33□□□□□ -0.11
PTPRN-202ENST00000409251 XBP1P17861 261 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 BIRC2Q13490 618 aa14.33□□□□□ -0.11
PTPRN-202ENST00000409251 AOC3Q16853 763 aa14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms