RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 AGTPBP1Q9UPW5 1226 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 ZNF131P52739 623 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 KRT31Q15323 416 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 E2F4Q16254 413 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 DPP8Q6V1X1 898 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 TBC1D10CQ8IV04 446 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 CCDC170Q8IYT3 715 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 KIAA1024Q9UPX6 916 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 ATF5Q9Y2D1 282 aaPredicted RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 RIPOR2Q9Y4F9 1068 aa11.83□□□□□ -0.52
CCDC40-204ENST00000397545 SRPRBQ9Y5M8 271 aaKnown RBP11.83□□□□□ -0.52
CCDC40-204ENST00000397545 TEX33O43247 280 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 HEXIM1O94992 359 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 MOCS3O95396 460 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 POLD1P28340 1107 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 TAB3Q8N5C8 712 aaPredicted RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 IFT74Q96LB3 600 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 NAP1L4Q99733 375 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 NUCKS1Q9H1E3 243 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CTDNEP1O95476 244 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 PABPC4Q13310 644 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 SUSD4Q5VX71 490 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 PPP1R21Q6ZMI0 780 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CACNA2D3Q8IZS8 1091 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 OXER1Q8TDS5 423 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 DPF2Q92785 391 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 KIFAP3Q92845 792 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 ARHGEF2Q92974 986 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CCDC127Q96BQ5 260 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 USP40Q9NVE5 1235 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CSF1RP07333 972 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 TRIM28Q13263 835 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CYB5R4Q7L1T6 521 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 P2RX5Q93086 422 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 DYNLL2Q96FJ2 89 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 STRBPQ96SI9 672 aaKnown RBP11.82□□□□□ -0.52
CCDC40-204ENST00000397545 NT5C3AQ9H0P0 336 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CPVLQ9H3G5 476 aa11.82□□□□□ -0.52
CCDC40-204ENST00000397545 CLTAP09496 248 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 MAP2K2P36507 400 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 EIF4A3P38919 411 aaKnown RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ADCY1Q08828 1119 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 MTF1Q14872 753 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 SYCE1Q8N0S2 351 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 TSNARE1Q96NA8 513 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 FERMT1Q9BQL6 677 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 TXNDC16Q9P2K2 825 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 GINS2Q9Y248 185 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 USP17L8P0C7I0 530 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ARL1P40616 181 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 CRKLP46109 303 aaKnown RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 SMTNP53814 917 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 EXOSC10Q01780 885 aaKnown RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 TRIM7Q9C029 511 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ALDH8A1Q9H2A2 487 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 LOC102724428A0A0B4J2F2 783 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 TRIM49BA6NDI0 452 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 CD19P15391 556 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 PTPREP23469 700 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 CDC27P30260 824 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 LIFRP42702 1097 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 SIK1P57059 783 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ARMCX5Q6P1M9 558 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 DCUN1D2Q6PH85 259 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 USP17L2Q6R6M4 530 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 FAM196AQ6ZSG2 479 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 CDCA7Q9BWT1 371 aaPredicted RBP11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ATP8A2Q9NTI2 1148 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 FAM184BQ9ULE4 1060 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 UBN2Q6ZU65 1347 aa11.81□□□□□ -0.52
CCDC40-204ENST00000397545 ATP8B1O43520 1251 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 DDAH1O94760 285 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 BCRP11274 1271 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ATP11AP98196 1134 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 GSPT2Q8IYD1 628 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 COA7Q96BR5 231 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 RFX7Q2KHR2 1363 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ARFGEF2Q9Y6D5 1785 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 PPFIA4O75335 1185 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 TBC1D8O95759 1140 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 PRR29P0C7W0 189 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 EEF1GP26641 437 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 MTMR3Q13615 1198 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ZNF658Q5TYW1 1059 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 HHATQ5VTY9 493 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 ZNF772Q68DY9 489 aaPredicted RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 MICAL1Q8TDZ2 1067 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 TBCKQ8TEA7 893 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 STMN2Q93045 179 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 KIFC2Q96AC6 838 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 RBM17Q96I25 401 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 DDX25Q9UHL0 483 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 THRAP3Q9Y2W1 955 aaKnown RBP11.8□□□□□ -0.52
CCDC40-204ENST00000397545 KCPQ6ZWJ8 1503 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 GOLGA8KD6RF30 607 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 GAS7O60861 476 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 MFAP3LO75121 409 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 STX2P32856 288 aa11.8□□□□□ -0.52
CCDC40-204ENST00000397545 SLC16A2P36021 539 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms