RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 TCP11X2Q5H9J9 407 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 FAM83BQ5T0W9 1011 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 SRRTQ9BXP5 876 aaKnown RBP16.91■□□□□ 0.3
GPC3-202ENST00000394299 PIM2Q9P1W9 311 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 HERC5Q9UII4 1024 aaKnown RBP16.91■□□□□ 0.3
GPC3-202ENST00000394299 PCDHA12Q9UN75 941 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 WNT10BO00744 389 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 ORC2Q13416 577 aaPredicted RBP16.91■□□□□ 0.3
GPC3-202ENST00000394299 PDIA5Q14554 519 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 MTF1Q14872 753 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 SV2BQ7L1I2 683 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 CDK5RAP3Q96JB5 506 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 BAG1Q99933 345 aaPredicted RBP16.91■□□□□ 0.3
GPC3-202ENST00000394299 CUEDC2Q9H467 287 aa16.91■□□□□ 0.3
GPC3-202ENST00000394299 COPB1P53618 953 aaKnown RBP16.9■□□□□ 0.3
GPC3-202ENST00000394299 KRT79Q5XKE5 535 aa16.9■□□□□ 0.3
GPC3-202ENST00000394299 SLC30A10Q6XR72 485 aa16.9■□□□□ 0.3
GPC3-202ENST00000394299 KCND1Q9NSA2 647 aa16.9■□□□□ 0.3
GPC3-202ENST00000394299 EXOC1Q9NV70 894 aa16.9■□□□□ 0.3
GPC3-202ENST00000394299 LIMA1Q9UHB6 759 aaKnown RBP16.9■□□□□ 0.3
GPC3-202ENST00000394299 ZBTB21Q9ULJ3 1066 aa16.9■□□□□ 0.3
GPC3-202ENST00000394299 LRRC10BA6NIK2 292 aa16.89■□□□□ 0.3
GPC3-202ENST00000394299 NAA30Q147X3 362 aaPredicted RBP16.89■□□□□ 0.3
GPC3-202ENST00000394299 ANKRD40Q6AI12 368 aa16.89■□□□□ 0.3
GPC3-202ENST00000394299 TOGARAM2Q6ZUX3 1019 aa16.89■□□□□ 0.3
GPC3-202ENST00000394299 KIAA0895Q8NCT3 520 aa16.89■□□□□ 0.3
GPC3-202ENST00000394299 CYP2W1Q8TAV3 490 aa16.89■□□□□ 0.3
GPC3-202ENST00000394299 LARP4BQ92615 738 aaKnown RBP16.89■□□□□ 0.3
GPC3-202ENST00000394299 DUSP9Q99956 384 aaKnown RBP16.89■□□□□ 0.3
GPC3-202ENST00000394299 DYNC1I1O14576 645 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 MYL1P05976 194 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 CASP14P31944 242 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 FXR1P51114 621 aaKnown RBP eCLIP16.89■□□□□ 0.29
GPC3-202ENST00000394299 FILIP1LQ4L180 1135 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 PRR16Q569H4 304 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 TTI2Q6NXR4 508 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 CCDC174Q6PII3 467 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 GLIS3Q8NEA6 775 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 SLC16A10Q8TF71 515 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 ZFP91Q96JP5 570 aaPredicted RBP16.89■□□□□ 0.29
GPC3-202ENST00000394299 TRIM47Q96LD4 638 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 CTAGE1Q96RT6 745 aa16.89■□□□□ 0.29
GPC3-202ENST00000394299 PSDA5PKW4 1024 aaPredicted RBP16.88■□□□□ 0.29
GPC3-202ENST00000394299 H7C1D1 291 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 NRDCO43847 1150 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 ARHGAP4P98171 946 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 GRIPAP1Q4V328 841 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 SYT10Q6XYQ8 523 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 FCHSD1Q86WN1 690 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 REXO1L1PQ8IX06 675 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 RAD54LQ92698 747 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 KIFC2Q96AC6 838 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 DESI2Q9BSY9 194 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 FBXO28Q9NVF7 368 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 TMX2Q9Y320 296 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 AKR1B15C9JRZ8 316 aaPredicted RBP16.88■□□□□ 0.29
GPC3-202ENST00000394299 E9PMD0 336 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 IDEP14735 1019 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 CCDC112Q8NEF3 446 aa16.88■□□□□ 0.29
GPC3-202ENST00000394299 ASTN2O75129 1339 aaPredicted RBP16.88■□□□□ 0.29
GPC3-202ENST00000394299 SOWAHDA6NJG2 315 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 FAM86B1E9PN63 330 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 PES1O00541 588 aaKnown RBP16.87■□□□□ 0.29
GPC3-202ENST00000394299 PSMA7O14818 248 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 GYPCP04921 128 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 SSBP05455 408 aaKnown RBP eCLIP16.87■□□□□ 0.29
GPC3-202ENST00000394299 FAM86B2P0C5J1 330 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 GTF2F1P35269 517 aaKnown RBP eCLIP16.87■□□□□ 0.297e-8■■■■□ 26.3
GPC3-202ENST00000394299 AMPD3Q01432 767 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 DGKZQ13574 1117 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 LRRC41Q15345 812 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 DALRD3Q5D0E6 543 aaKnown RBP16.87■□□□□ 0.29
GPC3-202ENST00000394299 BTNL9Q6UXG8 535 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 AGBL3Q8NEM8 1001 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 DDX12PQ92771 950 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 RAB34Q9BZG1 259 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 MAGEF1Q9HAY2 307 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 ARHGEF10LQ9HCE6 1279 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 PGAP2Q9UHJ9 254 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 STAT2P52630 851 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 CACNB1Q02641 598 aaPredicted RBP16.87■□□□□ 0.29
GPC3-202ENST00000394299 TMEM119Q4V9L6 283 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 PPFIBP1Q86W92 1011 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 CRYGNQ8WXF5 182 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 SEMA6BQ9H3T3 888 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 KCNMB3Q9NPA1 279 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 MYOZ2Q9NPC6 264 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 KIAA1024Q9UPX6 916 aa16.87■□□□□ 0.29
GPC3-202ENST00000394299 NPHP3-ACAD11A0A0J9YXS1 232 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 A0A0U1RQJ8 604 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 POTEB3A0JP26 581 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 POTECB2RU33 542 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 NFKBIEO00221 500 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 ARHGAP6O43182 974 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 USP11P51784 963 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 UBXN1Q04323 297 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 RAD51AP2Q09MP3 1159 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 STIM1Q13586 685 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 CIAPIN1Q6FI81 312 aa16.86■□□□□ 0.29
GPC3-202ENST00000394299 POTEBQ6S5H4 581 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms