RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TCP10L2B9ZVM9 353 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 MCF2LO15068 1137 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 PDE6AP16499 860 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 SLC38A10Q9HBR0 1119 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 POC1B-GALNT4F8VUJ3 575 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 MYO1FO00160 1098 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 IL13P35225 146 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 GCKP35557 465 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 IGBP1P78318 339 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 DCLK2Q8N568 766 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 AKT3Q9Y243 479 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 OSBPP22059 807 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 EEF1GP26641 437 aaKnown RBP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 TRIM4Q9C037 500 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 SLC39A2Q9NP94 309 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 LMBRD1Q9NUN5 540 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 LRFN2Q9ULH4 789 aa13.91□□□□□ -0.18
CCDC88C-204ENST00000389857 CCDC127Q96BQ5 260 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 FAM170AA1A519 330 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 CCNA1P78396 465 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 TTLL7Q6ZT98 887 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 SULF1Q8IWU6 871 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP6V0A1Q93050 837 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 PFKFB2O60825 505 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 APBA3O96018 575 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 PSMC2P35998 433 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 THOC5Q13769 683 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 TUBB6Q9BUF5 446 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 IRAK4Q9NWZ3 460 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 PNMA6EA0A0J9YXQ4 647 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 CLTAP09496 248 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 RSRC2Q7L4I2 434 aaKnown RBP13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 DESI2Q9BSY9 194 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 ABCB5Q2M3G0 1257 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 FAM26FQ5R3K3 315 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 SPDYE1Q8NFV5 336 aaPredicted RBP13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 AP5M1Q9H0R1 490 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 NDUFB9Q9Y6M9 179 aa13.9□□□□□ -0.18
CCDC88C-204ENST00000389857 ATP10DQ9P241 1426 aa13.9□□□□□ -0.19
CCDC88C-204ENST00000389857 ADCY9O60503 1353 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ESRRGP62508 458 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 LRCH2Q5VUJ6 765 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 CCDC197Q8NCU1 140 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ZC3H15Q8WU90 426 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 PPWD1Q96BP3 646 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 SLC8A2Q9UPR5 921 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 UHRF1BP1Q6BDS2 1440 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 LRRD1A4D1F6 860 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 CHL1O00533 1208 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 MAPK4P31152 587 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 BTDP43251 543 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 LRRC8AQ8IWT6 810 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 PRPF38AQ8NAV1 312 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 CNOT6LQ96LI5 555 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 INTS9Q9NV88 658 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 TPX2Q9ULW0 747 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 JRKLQ9Y4A0 524 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 MSH2P43246 934 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 SYMPKQ92797 1274 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ACCSQ96QU6 501 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ASPRV1Q53RT3 343 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ACTN1P12814 892 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 CCND2P30279 289 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 MESDQ14696 234 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 ODR4Q5SWX8 454 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 APOL6Q9BWW8 343 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 EPN1Q9Y6I3 576 aaPredicted RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 HNRNPDLO14979 420 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 GUCY2DQ02846 1103 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 RCN2Q14257 317 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 CMTR1Q8N1G2 835 aaKnown RBP13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 MCUQ8NE86 351 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 BCAS4Q8TDM0 211 aa13.89□□□□□ -0.19
CCDC88C-204ENST00000389857 RASSF7Q02833 373 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 SLFN13Q68D06 897 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 DPP9Q86TI2 863 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 AK8Q96MA6 479 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 TRIM35Q9UPQ4 493 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 BAG6P46379 1132 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 COPB1P53618 953 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 PTPROQ16827 1216 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 PDCD7Q8N8D1 485 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 GPKOWQ92917 476 aaPredicted RBP eCLIP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 ZNF577Q9BSK1 485 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 TNKSO95271 1327 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 CDC25BP30305 580 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 KCTD2Q14681 263 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 RASIP1Q5U651 963 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 LGR6Q9HBX8 967 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 OLA1Q9NTK5 396 aaKnown RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 CFAP43Q8NDM7 1665 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 USP14P54578 494 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 HP1BP3Q5SSJ5 553 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 ARHGEF18Q6ZSZ5 1173 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 ZBTB38Q8NAP3 1195 aaPredicted RBP13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 CCDC138Q96M89 665 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 TRIM15Q9C019 465 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 USP21Q9UK80 565 aa13.88□□□□□ -0.19
CCDC88C-204ENST00000389857 AFPP02771 609 aaKnown RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms