RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 APOBEC3FQ8IUX4 373 aaKnown RBP24.17■■□□□ 1.46
TRIM54-202ENST00000380075 SULF1Q8IWU6 871 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 GIMAP8Q8ND71 665 aaPredicted RBP24.17■■□□□ 1.46
TRIM54-202ENST00000380075 NOC3LQ8WTT2 800 aaKnown RBP24.17■■□□□ 1.46
TRIM54-202ENST00000380075 CALML4Q96GE6 196 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 IDI2Q9BXS1 227 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 RAB34Q9BZG1 259 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 GLT8D2Q9H1C3 349 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 JMJD4Q9H9V9 463 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 FAM198AQ9UFP1 575 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 GDAQ9Y2T3 454 aa24.17■■□□□ 1.46
TRIM54-202ENST00000380075 FXR2P51116 673 aaKnown RBP eCLIP24.16■■□□□ 1.46
TRIM54-202ENST00000380075 TCP10Q12799 353 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 TMEM266Q2M3C6 531 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 ADGRF4Q8IZF3 695 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 MTMR8Q96EF0 704 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 MTMR9Q96QG7 549 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 C7orf25Q9BPX7 421 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 DEFB129Q9H1M3 183 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 GPCPD1Q9NPB8 672 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 KCNJ18B7U540 433 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 N4BP3O15049 544 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 HOXA7P31268 230 aaPredicted RBP24.16■■□□□ 1.46
TRIM54-202ENST00000380075 KCNJ12Q14500 433 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 RASA3Q14644 834 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 PRAMEF18Q5VWM3 479 aa24.16■■□□□ 1.46
TRIM54-202ENST00000380075 DHTKD1Q96HY7 919 aaPredicted RBP24.16■■□□□ 1.46
TRIM54-202ENST00000380075 COPB1P53618 953 aaKnown RBP24.15■■□□□ 1.46
TRIM54-202ENST00000380075 CALCRLQ16602 461 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 FKBP1CQ5VVH2 108 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 ZFPM1Q8IX07 1006 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 PDCL2Q8N4E4 241 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 RBM46Q8TBY0 533 aaKnown RBP24.15■■□□□ 1.46
TRIM54-202ENST00000380075 COA7Q96BR5 231 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 NAP1L4Q99733 375 aaKnown RBP24.15■■□□□ 1.46
TRIM54-202ENST00000380075 THAP9Q9H5L6 903 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 PI4KBQ9UBF8 816 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 STK17AQ9UEE5 414 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 CNTNAP1P78357 1384 aa24.15■■□□□ 1.46
TRIM54-202ENST00000380075 MPHOSPH10O00566 681 aaKnown RBP24.14■■□□□ 1.46
TRIM54-202ENST00000380075 MFAP3LO75121 409 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 EEF1GP26641 437 aaKnown RBP24.14■■□□□ 1.46
TRIM54-202ENST00000380075 MRPL12P52815 198 aaKnown RBP24.14■■□□□ 1.46
TRIM54-202ENST00000380075 RBL2Q08999 1139 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 PPP4R3AQ6IN85 833 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 TRIM65Q6PJ69 517 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 SMC1BQ8NDV3 1235 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 CUL5Q93034 780 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 MKL1Q969V6 931 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 TRIM9Q9C026 710 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 TMEM39BQ9GZU3 492 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 TMEM260Q9NX78 707 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 NYAP2Q9P242 653 aa24.14■■□□□ 1.46
TRIM54-202ENST00000380075 TRAF5O00463 557 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 ZBTB5O15062 677 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 ITGBL1O95965 494 aaPredicted RBP24.14■■□□□ 1.45
TRIM54-202ENST00000380075 FECHP22830 423 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 TECP42680 631 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 TNFAIP1Q13829 316 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 PDIA5Q14554 519 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 CCDC96Q2M329 555 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 COBLL1Q53SF7 1204 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 POTEDQ86YR6 584 aa24.14■■□□□ 1.45
TRIM54-202ENST00000380075 CLK2P49760 499 aaKnown RBP24.13■■□□□ 1.45
TRIM54-202ENST00000380075 DCAF4Q8WV16 495 aa24.13■■□□□ 1.45
TRIM54-202ENST00000380075 SRRTQ9BXP5 876 aaKnown RBP24.13■■□□□ 1.45
TRIM54-202ENST00000380075 ZNF215Q9UL58 517 aaPredicted RBP24.13■■□□□ 1.45
TRIM54-202ENST00000380075 GCFC2P16383 781 aaKnown RBP24.12■■□□□ 1.45
TRIM54-202ENST00000380075 FAM83AQ86UY5 434 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 CLEC10AQ8IUN9 316 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 CDAN1Q8IWY9 1227 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 MMTAG2Q9BU76 263 aaKnown RBP24.12■■□□□ 1.45
TRIM54-202ENST00000380075 KANSL2Q9H9L4 492 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 EXOC1Q9NV70 894 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 CGNQ9P2M7 1197 aaKnown RBP24.12■■□□□ 1.45
TRIM54-202ENST00000380075 BICDL2A1A5D9 508 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 CCT6AP40227 531 aaKnown RBP24.12■■□□□ 1.45
TRIM54-202ENST00000380075 TNNI2P48788 182 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 LRWD1Q9UFC0 647 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 DNAI1Q9UI46 699 aa24.12■■□□□ 1.45
TRIM54-202ENST00000380075 CCDC175P0C221 793 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 LRRC15Q8TF66 581 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 FAM151AQ8WW52 585 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 PLIN2Q99541 437 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 CCDC94Q9BW85 323 aaPredicted RBP24.11■■□□□ 1.45
TRIM54-202ENST00000380075 POLR2AP24928 1970 aaKnown RBP24.11■■□□□ 1.45
TRIM54-202ENST00000380075 ENTPD3O75355 529 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 TXKP42681 527 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 CNNM4Q6P4Q7 775 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 TRIM34Q9BYJ4 488 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 LRRC27Q9C0I9 530 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 DNAJC18Q9H819 358 aa24.11■■□□□ 1.45
TRIM54-202ENST00000380075 GYPCP04921 128 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 ASIC1P78348 528 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 CERKLQ49MI3 558 aaPredicted RBP24.1■■□□□ 1.45
TRIM54-202ENST00000380075 TOGARAM2Q6ZUX3 1019 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 TEPSINQ96N21 525 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 VPS16Q9H269 839 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 TAB2Q9NYJ8 693 aa24.1■■□□□ 1.45
TRIM54-202ENST00000380075 MAGEC2Q9UBF1 373 aaPredicted RBP24.1■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms