RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 PRCPP42785 496 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 MCM6Q14566 821 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 TBC1D10BQ4KMP7 808 aaPredicted RBP12.1□□□□□ -0.47
NEDD9-201ENST00000379433 PRR16Q569H4 304 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 SAMD7Q7Z3H4 446 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 SNX29Q8TEQ0 813 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 ANKS1AQ92625 1134 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 LZTS2Q9BRK4 669 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 SWAP70Q9UH65 585 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 DACH1Q9UI36 760 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 NUB1Q9Y5A7 615 aa12.1□□□□□ -0.47
NEDD9-201ENST00000379433 MEIS1O00470 390 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 CYP4A11Q02928 519 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 PDE4DQ08499 809 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 PTPN14Q15678 1187 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 C4orf32Q8N8J7 132 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 JDP2Q8WYK2 163 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 TBC1D5Q92609 795 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 KANSL2Q9H9L4 492 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 INTS13Q9NVM9 706 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 ASTN2O75129 1339 aaPredicted RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 PNMA6FA0A0J9YX94 578 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 ZBTB5O15062 677 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 ZNF76P36508 570 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 TRAPPC10P48553 1259 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 DNAJC21Q5F1R6 531 aaKnown RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 FAM83BQ5T0W9 1011 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 ZNF771Q7L3S4 317 aaPredicted RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 CUL5Q93034 780 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 TRIM47Q96LD4 638 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 SUDS3Q9H7L9 328 aaPredicted RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 DDX25Q9UHL0 483 aaKnown RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 LONP1P36776 959 aaKnown RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 PMS1P54277 932 aaKnown RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 CCZ1BP86790 482 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 CCZ1P86791 482 aaPredicted RBP12.09□□□□□ -0.47
NEDD9-201ENST00000379433 KMT5BQ4FZB7 885 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 RPAINQ86UA6 219 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 CYP2W1Q8TAV3 490 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 SH3GLB2Q9NR46 395 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 SCN9AQ15858 1988 aa12.09□□□□□ -0.47
NEDD9-201ENST00000379433 ANKRD31Q8N7Z5 1873 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 IKBKBO14920 756 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 NAALADL2Q58DX5 795 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 CEP135Q66GS9 1140 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 PDXDC2PQ6P474 469 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 RIOX1Q9H6W3 641 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 MTF1Q14872 753 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 C7orf43Q8WVR3 580 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 CALML4Q96GE6 196 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 DHX36Q9H2U1 1008 aaKnown RBP12.08□□□□□ -0.48
NEDD9-201ENST00000379433 HDAC9Q9UKV0 1011 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 CBFA2T2O43439 604 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 SARSP49591 514 aaKnown RBP12.08□□□□□ -0.48
NEDD9-201ENST00000379433 MRPL12P52815 198 aaKnown RBP12.08□□□□□ -0.48
NEDD9-201ENST00000379433 RASSF7Q02833 373 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 CXCL9Q07325 125 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 E2F4Q16254 413 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 WDR78Q5VTH9 848 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 RSBN1LQ6PCB5 846 aaPredicted RBP12.08□□□□□ -0.48
NEDD9-201ENST00000379433 SIAH1Q8IUQ4 282 aa12.08□□□□□ -0.48
NEDD9-201ENST00000379433 ZNF70Q9UC06 446 aaPredicted RBP12.08□□□□□ -0.48
NEDD9-201ENST00000379433 ZNF831Q5JPB2 1677 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 FAM237AA0A1B0GTK4 181 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 PAK1Q13153 545 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 DLK2Q6UY11 383 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 SYT10Q6XYQ8 523 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 NCAPGQ9BPX3 1015 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 SRRTQ9BXP5 876 aaKnown RBP12.07□□□□□ -0.48
NEDD9-201ENST00000379433 EXOC1Q9NV70 894 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 SERPINA10Q9UK55 444 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 KIAA1551Q9HCM1 1747 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 NAV1Q8NEY1 1877 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 NPHP3-ACAD11A0A0J9YXS1 232 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 SPDYE2BA6NHP3 402 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 M0R2N6 131 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 DDX39AO00148 427 aaKnown RBP12.07□□□□□ -0.48
NEDD9-201ENST00000379433 KRT18P05783 430 aaKnown RBP12.07□□□□□ -0.48
NEDD9-201ENST00000379433 SPDYE6P0CI01 402 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 TMEM266Q2M3C6 531 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 KIAA1755Q5JYT7 1200 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 GPATCH4Q5T3I0 446 aaKnown RBP12.07□□□□□ -0.48
NEDD9-201ENST00000379433 IGSF22Q8N9C0 903 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 GLIS3Q8NEA6 775 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 GSDMAQ96QA5 445 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 PCDHA12Q9UN75 941 aa12.07□□□□□ -0.48
NEDD9-201ENST00000379433 GTPBP6O43824 516 aaPredicted RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 BMP3P12645 472 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 STK4Q13043 487 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 ZC3H12AQ5D1E8 599 aaKnown RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 NCAPH2Q6IBW4 605 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 KCNK18Q7Z418 384 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 CCDC17Q96LX7 622 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 BMP2KQ9NSY1 1161 aaPredicted RBP12.06□□□□□ -0.48
NEDD9-201ENST00000379433 SMCHD1A6NHR9 2005 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 SPDYE3A6NKU9 549 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 PAX7P23759 505 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 GSDMDP57764 484 aa12.06□□□□□ -0.48
NEDD9-201ENST00000379433 DDX60LQ5H9U9 1706 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms