RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 GARSP41250 739 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 MRPS25P82663 173 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 GPT2Q8TD30 523 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 FGD4Q96M96 766 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 PUS3Q9BZE2 481 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 DYNLL1P63167 89 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 HABP4Q5JVS0 413 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 SLC35F6Q8N357 371 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 PCDHA1Q9Y5I3 950 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 DPP9Q86TI2 863 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 TTC30AQ86WT1 665 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 DCPSQ96C86 337 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 PYCARDQ9ULZ3 195 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 AOX1Q06278 1338 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 CD58P19256 250 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 KIF11P52732 1056 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 RBL2Q08999 1139 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 IFT88Q13099 833 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 SCYL3Q8IZE3 742 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 MAGOHBQ96A72 148 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 EAF2Q96CJ1 260 aaPredicted RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 THOC1Q96FV9 657 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 INO80B-WBP1J3KQ70 363 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 FTCDO95954 541 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 CDR2Q01850 454 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 ABCB5Q2M3G0 1257 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 LRCH2Q5VUJ6 765 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 SPDYE1Q8NFV5 336 aaPredicted RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 TBC1D22AQ8WUA7 517 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 INO80BQ9C086 356 aaPredicted RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 FTOQ9C0B1 505 aaKnown RBP eCLIP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 GREM2Q9H772 168 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 TLR7Q9NYK1 1049 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 NXF1Q9UBU9 619 aaKnown RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 BCAP29Q9UHQ4 241 aa14.93□□□□□ -0.02
COL4A1-201ENST00000375820 FAF1Q9UNN5 650 aaPredicted RBP14.93□□□□□ -0.02
COL4A1-201ENST00000375820 STMN1P16949 149 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 ZNF577Q9BSK1 485 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 ATP8A1Q9Y2Q0 1164 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 GPATCH8Q9UKJ3 1502 aaKnown RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 M0R2C6 588 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 CHL1O00533 1208 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 MOCS3O95396 460 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 PHKA1P46020 1223 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 FAM26FQ5R3K3 315 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 DNAAF3Q8N9W5 541 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 H2AFZP0C0S5 128 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 COPB1P53618 953 aaKnown RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 IQCB1Q15051 598 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 H2AFVQ71UI9 128 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 IWS1Q96ST2 819 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 NBPF3Q9H094 633 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 APOEP02649 317 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 MARK3P27448 753 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 TCP11X2Q5H9J9 407 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 ABI1Q8IZP0 508 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 SLC38A10Q9HBR0 1119 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 SLC5A4Q9NY91 659 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 PASKQ96RG2 1323 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 ADCY9O60503 1353 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 TOM1L1O75674 476 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 PDE6BP35913 854 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 PLTPP55058 493 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 BASP1P80723 227 aaKnown RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 GABPB1Q06547 395 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 RASIP1Q5U651 963 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 PDZD4Q76G19 769 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 TESK2Q96S53 571 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 COL4A3BPQ9Y5P4 624 aa14.92□□□□□ -0.02
COL4A1-201ENST00000375820 EPN1Q9Y6I3 576 aaPredicted RBP14.92□□□□□ -0.02
COL4A1-201ENST00000375820 MAPK4P31152 587 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 FAM133AQ8N9E0 248 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 NCAPGQ9BPX3 1015 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 EPB41L5Q9HCM4 733 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 TYW1Q9NV66 732 aaKnown RBP14.91□□□□□ -0.02
COL4A1-201ENST00000375820 TFAMQ00059 246 aaKnown RBP14.91□□□□□ -0.02
COL4A1-201ENST00000375820 PPP1R13BQ96KQ4 1090 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 DBNDD1Q9H9R9 158 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 PPP1R9AQ9ULJ8 1098 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 GFPT2O94808 682 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 BRD1O95696 1058 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 RNASELQ05823 741 aaKnown RBP14.91□□□□□ -0.02
COL4A1-201ENST00000375820 MAP3K21Q5TCX8 1036 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 KRT82Q9NSB4 513 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 PTPRKQ15262 1439 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 DUOX2Q9NRD8 1548 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 A6NNZ2 444 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 GTPBP6O43824 516 aaPredicted RBP14.91□□□□□ -0.02
COL4A1-201ENST00000375820 NR2F2P24468 414 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 SLC7A5Q01650 507 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 PPP2R5BQ15173 497 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 TUBB8Q3ZCM7 444 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 USPL1Q5W0Q7 1092 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 CCDC51Q96ER9 411 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 TTC4O95801 387 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 PTK2Q05397 1052 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 CDKL2Q92772 493 aa14.91□□□□□ -0.02
COL4A1-201ENST00000375820 TUBGCP2Q9BSJ2 902 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms